Data and motif summary of RBP FAM120A

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RBP summary

RBP Name: FAM120A
RBP description: Family With Sequence Similarity 120A
UniProt ID: Q9NZB2
Entrez Gene: 23196
Species: Homo Sapiens
Protein domains:
Subcellular localization
(1 (nucleus) – 5 (cytoplasm): 		4(HepG2)
5(HeLa)

CLIP data summary

Data source: ENCODE Cell-type/Tissue: HepG2
Unique tags: 10879323 Peaks: 67881
Genomic distribution:
  • CDS exon
  • 5' UTR exon
  • Upstream 10K
  • 3' UTR exon
  • Downstream 10K
  • Intron
  • Deep intergenic
Crosslink sites: 2032 (CIMS, deletion) ; 1852 (CIMS, insertion); 27817 (CIMS, substitution); 15539 (CITS)

Motif summary

Cluster Motif Name Consensus Motif logo Score No. Sites AI scatter plot AI consistency AI p-value
1 HepG2.FAM120A.0
  • CTGGGGG
    		•  337.6406245 2030 0.611940299 (41/67) 0.043218617
    1 HepG2.FAM120A.7
  • CGTGGGG
    		•  364.5287406 1597 0.591836735 (29/49) 0.126434865
    2 HepG2.FAM120A.1
  • GGCGGGG
    		•  516.8180531 3988 0.594594595 (22/37) 0.1620043
    2 HepG2.FAM120A.2
  • GCGGGGT
    		•  320.8772143 1401 0.470588235 (8/17) 0.685470581
    3 HepG2.FAM120A.3
  • GGGGAGG
    		•  613.2027624 6152 0.525641026 (41/78) 0.367171017
    3 HepG2.FAM120A.4
  • GGGGGAG
  • GAGGGAG
    		•  619.58792 7462 0.47826087 (22/46) 0.670630961
    3 HepG2.FAM120A.8
  • GGGAGGC
    		•  473.9689959 3128 0.627659574 (59/94) 0.008604798
    4 HepG2.FAM120A.6
  • GAGGGGA
    		•  386.8981942 2200 0.666666667 (6/9) 0.25390625
    5 HepG2.FAM120A.5
  • GGGGCGC
    		•  300.8322007 1353 0.466666667 (21/45) 0.724257835