Data and motif summary of RBP EIF3D

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RBP summary

RBP Name: EIF3D
RBP description: Eukaryotic Translation Initiation Factor 3 Subunit D
UniProt ID: O15371
Entrez Gene: 8664
Species: Homo Sapiens
Protein domains:
Subcellular localization
(1 (nucleus) – 5 (cytoplasm): 		3(HepG2)
3(HeLa)

CLIP data summary

Data source: ENCODE Cell-type/Tissue: HepG2
Unique tags: 21455459 Peaks: 67653
Genomic distribution:
  • CDS exon
  • 5' UTR exon
  • Upstream 10K
  • 3' UTR exon
  • Downstream 10K
  • Intron
  • Deep intergenic
Crosslink sites: 2188 (CIMS, deletion) ; 3023 (CIMS, insertion); 63417 (CIMS, substitution); 18151 (CITS)

Motif summary

Cluster Motif Name Consensus Motif logo Score No. Sites AI scatter plot AI consistency AI p-value
1 HepG2.EIF3D.0
  • CCATGGA
    		•  116.2759022 238 0.577981651 (63/109) 0.062502271
    2 HepG2.EIF3D.1
  • CGGCGAT
    		•  52.70682041 52 0.421052632 (24/57) 0.907574759
    2 HepG2.EIF3D.6
  • GTATCGC
    		•  55.77338031 67 0.491803279 (30/61) 0.600923686
    3 HepG2.EIF3D.8
  • CGAGATT
    		•  93.37159699 157 0.456790123 (37/81) 0.812912791
    4 HepG2.EIF3D.2
  • GTCAGCC
    		•  103.9472939 234 0.386363636 (17/44) 0.951929123
    4 HepG2.EIF3D.3
  • TCAGCTG
    		•  107.5285746 277 0.46 (23/50) 0.760056169
    5 HepG2.EIF3D.9
  • GCGGAAC
    		•  59.49823697 69 0.508196721 (31/61) 0.5
    6 HepG2.EIF3D.4
  • CAGTGCT
    		•  97.35094571 211 0.431818182 (38/88) 0.917279744
    6 HepG2.EIF3D.5
  • CAGATGC
    		•  90.27236846 179 0.577464789 (41/71) 0.117548781
    7 HepG2.EIF3D.7
  • CAACTGG
    		•  86.0776952 165 0.544444444 (49/90) 0.230396236