Data and motif summary of RBP DKC1

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RBP summary

RBP Name: DKC1
RBP description: Dyskerin Pseudouridine Synthase 1
UniProt ID: O60832
Entrez Gene: 1736
Species: Homo Sapiens
Protein domains: PUAx1
Subcellular localization
(1 (nucleus) – 5 (cytoplasm): 		1 (nucleolus)(HepG2)
1 (nucleolus)(HeLa)

CLIP data summary

Data source: ENCODE Cell-type/Tissue: HepG2
Unique tags: 7552674 Peaks: 13465
Genomic distribution:
  • CDS exon
  • 5' UTR exon
  • Upstream 10K
  • 3' UTR exon
  • Downstream 10K
  • Intron
  • Deep intergenic
Crosslink sites: 1137 (CIMS, deletion) ; 1433 (CIMS, insertion); 7373 (CIMS, substitution); 4635 (CITS)

Motif summary

Cluster Motif Name Consensus Motif logo Score No. Sites AI scatter plot AI consistency AI p-value
1 HepG2.DKC1.0
  • ATGAGTG
    		•  221.9588357 468 0.25 (1/4) 0.9375
    1 HepG2.DKC1.1
  • ACTCTAT
    		•  40.0531223 23 0.333333333 (1/3) 0.875
    2 HepG2.DKC1.2
  • AAACGCG
    		•  25.44887257 9 0 (0/1) 1
    3 HepG2.DKC1.3
  • TATACCG
    		•  38.72928101 12 0 (0/1) 1
    4 HepG2.DKC1.4
  • TGAACAA
    		•  54.24575797 59 1 (1/1) 0.5
    4 HepG2.DKC1.7
  • GAACAAA
    		•  44.49914132 34 1 (2/2) 0.25
    5 HepG2.DKC1.6
  • GGTCAAT
    		•  45.21878542 32 0 (0/1) 1
    6 HepG2.DKC1.5
  • GTGCATG
    		•  295.214013 798 0 (0/2) 1
    7 HepG2.DKC1.8
  • GTGTGTG
    		•  514.7743205 2758 1 (1/1) 0.5
    7 HepG2.DKC1.9
  • AGTGTGT
    		•  462.4281802 1505 1 (1/1) 0.5