Data and motif summary of RBP DDX6

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RBP summary

RBP Name: DDX6
RBP description: DEAD-Box Helicase 6
UniProt ID: P26196
Entrez Gene: 1656
Species: Homo Sapiens
Protein domains:
Subcellular localization
(1 (nucleus) – 5 (cytoplasm): 		5(HepG2)
5(HeLa)

CLIP data summary

Data source: ENCODE Cell-type/Tissue: HepG2
Unique tags: 1872948 Peaks: 8347
Genomic distribution:
  • CDS exon
  • 5' UTR exon
  • Upstream 10K
  • 3' UTR exon
  • Downstream 10K
  • Intron
  • Deep intergenic
Crosslink sites: 361 (CIMS, deletion) ; 409 (CIMS, insertion); 3975 (CIMS, substitution); 1010 (CITS)

Motif summary

Cluster Motif Name Consensus Motif logo Score No. Sites AI scatter plot AI consistency AI p-value
1 HepG2.DDX6.0
  • TGCATGC
    		•  47.1625297 34 0 (0/1) 1
    1 HepG2.DDX6.3
  • CTGCATG
    		•  41.2048034 31 0.2 (1/5) 0.96875
    1 HepG2.DDX6.4
  • CCTGCAT
    		•  30.65181696 17 0.2 (1/5) 0.96875
    2 HepG2.DDX6.5
  • AGTGCTA
    		•  30.75201304 18 0.666666667 (2/3) 0.5
    3 HepG2.DDX6.7
  • GAGCCTT
    		•  31.0601108 14 1 (3/3) 0.125
    4 HepG2.DDX6.1
  • CAACGCG
    		•  21.79799347 5 0.25 (1/4) 0.9375
    4 HepG2.DDX6.6
  • CGCGTTG
    		•  25.40314209 6 0 (0/2) 1
    5 HepG2.DDX6.2
  • AGTTGCC
  • AGTTCCC
    		•  35.60849249 22 0.8 (4/5) 0.1875
    6 HepG2.DDX6.8
  • TCGGTTA
    		•  25.42003744 4 NA (0/0) NA