Data and motif summary of RBP DDX59

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RBP summary

RBP Name: DDX59
RBP description: DEAD-Box Helicase 59
UniProt ID: Q5T1V6
Entrez Gene: 83479
Species: Homo Sapiens
Protein domains:
Subcellular localization
(1 (nucleus) – 5 (cytoplasm): 		4(HepG2)
4(HeLa)

CLIP data summary

Data source: ENCODE Cell-type/Tissue: HepG2
Unique tags: 8640350 Peaks: 19363
Genomic distribution:
  • CDS exon
  • 5' UTR exon
  • Upstream 10K
  • 3' UTR exon
  • Downstream 10K
  • Intron
  • Deep intergenic
Crosslink sites: 857 (CIMS, deletion) ; 1353 (CIMS, insertion); 17378 (CIMS, substitution); 4983 (CITS)

Motif summary

Cluster Motif Name Consensus Motif logo Score No. Sites AI scatter plot AI consistency AI p-value
1 HepG2.DDX59.0
  • CCCATCC
  • CCCATCT
    		•  131.4648678 265 0.5 (8/16) 0.598190308
    1 HepG2.DDX59.1
  • CCCCATC
  • TCCCATC
    		•  126.7355392 264 0.571428571 (8/14) 0.395263672
    1 HepG2.DDX59.6
  • CTCCCAT
    		•  94.89177076 141 0.333333333 (6/18) 0.951873779
    2 HepG2.DDX59.3
  • CATCCCT
    		•  110.760323 160 0.421052632 (8/19) 0.820358276
    2 HepG2.DDX59.5
  • ACCCCTT
    		•  110.549454 194 0.510638298 (24/47) 0.5
    2 HepG2.DDX59.7
  • GACCCCT
    		•  79.37019852 123 0.6 (12/20) 0.251722336
    3 HepG2.DDX59.2
  • CACTTCC
    		•  109.3447075 155 0.5 (6/12) 0.612792969
    4 HepG2.DDX59.4
  • AGTCCCC
    		•  70.76698259 107 0.481481481 (13/27) 0.649445981