Data and motif summary of RBP DDX55

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RBP summary

RBP Name: DDX55
RBP description: DEAD-Box Helicase 55
UniProt ID: Q8NHQ9
Entrez Gene: 57696
Species: Homo Sapiens
Protein domains:
Subcellular localization
(1 (nucleus) – 5 (cytoplasm): 		3(HepG2)
3(HeLa)

CLIP data summary

Data source: ENCODE Cell-type/Tissue: HepG2
Unique tags: 4517550 Peaks: 21229
Genomic distribution:
  • CDS exon
  • 5' UTR exon
  • Upstream 10K
  • 3' UTR exon
  • Downstream 10K
  • Intron
  • Deep intergenic
Crosslink sites: 599 (CIMS, deletion) ; 621 (CIMS, insertion); 10388 (CIMS, substitution); 4823 (CITS)

Motif summary

Cluster Motif Name Consensus Motif logo Score No. Sites AI scatter plot AI consistency AI p-value
1 HepG2.DDX55.0
  • TGCTGTA
    		•  67.35965637 90 0.714285714 (10/14) 0.089782715
    1 HepG2.DDX55.1
  • GCTGTAT
    		•  57.03361348 60 0.692307692 (9/13) 0.133422852
    2 HepG2.DDX55.7
  • CCGTATT
    		•  50.51922061 42 0.6 (3/5) 0.5
    3 HepG2.DDX55.2
  • CGCGCTA
    		•  30.28300509 11 0.25 (2/8) 0.96484375
    3 HepG2.DDX55.6
  • TCGCTAG
    		•  37.62773204 15 0 (0/2) 1
    4 HepG2.DDX55.3
  • GTCGCGT
    		•  27.56022778 9 0.333333333 (1/3) 0.875
    5 HepG2.DDX55.9
  • CGACGCA
    		•  25.83445782 7 0.555555556 (5/9) 0.5
    6 HepG2.DDX55.5
  • TTCGGTT
    		•  65.57873457 62 0.4 (2/5) 0.8125
    7 HepG2.DDX55.4
  • ATCATGT
    		•  55.88900007 68 0.5 (6/12) 0.612792969
    8 HepG2.DDX55.8
  • ACTTTGT
    		•  104.2525171 220 0.555555556 (5/9) 0.5