Data and motif summary of RBP DDX3X

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RBP summary

RBP Name: DDX3X
RBP description: DEAD-Box Helicase 3 X-Linked
UniProt ID: O00571
Entrez Gene: 1654
Species: Homo Sapiens
Protein domains:
Subcellular localization
(1 (nucleus) – 5 (cytoplasm): 		5(HepG2)
5(HeLa)

CLIP data summary

Data source: ENCODE Cell-type/Tissue: HepG2
Unique tags: 5490903 Peaks: 28254
Genomic distribution:
  • CDS exon
  • 5' UTR exon
  • Upstream 10K
  • 3' UTR exon
  • Downstream 10K
  • Intron
  • Deep intergenic
Crosslink sites: 803 (CIMS, deletion) ; 1944 (CIMS, insertion); 12377 (CIMS, substitution); 7108 (CITS)

Motif summary

Cluster Motif Name Consensus Motif logo Score No. Sites AI scatter plot AI consistency AI p-value
1 HepG2.DDX3X.0
  • CCGCGCT
    		•  104.7535675 212 0.526315789 (10/19) 0.5
    1 HepG2.DDX3X.1
  • AGCCGCG
  • CGCCGCG
    		•  145.4220596 469 0.533333333 (16/30) 0.427767776
    1 HepG2.DDX3X.2
  • CGCGCTG
    		•  117.2770621 265 0.75862069 (22/29) 0.004065029
    1 HepG2.DDX3X.6
  • GCGCGAC
    		•  72.90272395 100 0.56 (14/25) 0.345018983
    2 HepG2.DDX3X.3
  • CGGCCGC
    		•  146.1434143 403 0.785714286 (11/14) 0.028686523
    2 HepG2.DDX3X.4
  • CGCGGCC
    		•  127.290673 348 0.6 (15/25) 0.212178111
    2 HepG2.DDX3X.7
  • GCCGCCG
    		•  146.9878429 433 0.652173913 (15/23) 0.105019808
    3 HepG2.DDX3X.5
  • TAGCGGC
    		•  95.76501824 164 0.6 (12/20) 0.251722336
    3 HepG2.DDX3X.8
  • GGCGCTA
    		•  82.64549477 114 0.733333333 (11/15) 0.059234619