Data and motif summary of RBP CSTF2T

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RBP summary

RBP Name: CSTF2T
RBP description: Cleavage Stimulation Factor Subunit 2 Tau Variant
UniProt ID: Q9H0L4
Entrez Gene: 23283
Species: Homo Sapiens
Protein domains: RRMx1
Subcellular localization
(1 (nucleus) – 5 (cytoplasm): 		3(HepG2)
3(HeLa)

CLIP data summary

Data source: ENCODE Cell-type/Tissue: HepG2
Unique tags: 20861320 Peaks: 97668
Genomic distribution:
  • CDS exon
  • 5' UTR exon
  • Upstream 10K
  • 3' UTR exon
  • Downstream 10K
  • Intron
  • Deep intergenic
Crosslink sites: 5459 (CIMS, deletion) ; 2914 (CIMS, insertion); 53174 (CIMS, substitution); 31383 (CITS)

Motif summary

Cluster Motif Name Consensus Motif logo Score No. Sites AI scatter plot AI consistency AI p-value
1 HepG2.CSTF2T.0
  • CAGAGGG
  • GAGAGGG
    		•  541.7444841 5360 0.638461538 (83/130) 0.00101189
    1 HepG2.CSTF2T.7
  • GAGGGAG
    		•  694.7439715 7373 0.631067961 (65/103) 0.005031667
    2 HepG2.CSTF2T.2
  • GAGGGGA
  • GAGGGCA
    		•  496.3050876 4625 0.673913043 (31/46) 0.012948041
    2 HepG2.CSTF2T.6
  • AGGGGAG
    		•  491.5803325 3913 0.632352941 (43/68) 0.019230027
    3 HepG2.CSTF2T.5
  • GCAGGGA
    		•  550.4611436 3861 0.561403509 (32/57) 0.213521428
    4 HepG2.CSTF2T.1
  • GGGAGGC
    		•  644.482431 6082 0.597402597 (92/154) 0.009575094
    4 HepG2.CSTF2T.3
  • GGAGAGG
    		•  550.2587164 4739 0.493333333 (37/75) 0.591223075
    4 HepG2.CSTF2T.4
  • GGGAGAG
    		•  606.2561375 5585 0.621212121 (82/132) 0.003373179