Data and motif summary of RBP CSTF2

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RBP summary

RBP Name: CSTF2
RBP description: Cleavage Stimulation Factor Subunit 2
UniProt ID: P33240
Entrez Gene: 1478
Species: Homo Sapiens
Protein domains: RRMx1
Subcellular localization
(1 (nucleus) – 5 (cytoplasm): 		1(HepG2)
1(HeLa)

CLIP data summary

Data source: ENCODE Cell-type/Tissue: HepG2
Unique tags: 23099181 Peaks: 75022
Genomic distribution:
  • CDS exon
  • 5' UTR exon
  • Upstream 10K
  • 3' UTR exon
  • Downstream 10K
  • Intron
  • Deep intergenic
Crosslink sites: 1425 (CIMS, deletion) ; 1922 (CIMS, insertion); 34649 (CIMS, substitution); 33862 (CITS)

Motif summary

Cluster Motif Name Consensus Motif logo Score No. Sites AI scatter plot AI consistency AI p-value
1 HepG2.CSTF2.0
  • GTGTCTT
    		•  341.7329617 2323 0.625 (35/56) 0.040713407
    2 HepG2.CSTF2.1
  • ATGTGTC
  • TTGTGTC
  • TTGTGTG
    		•  435.5988723 4749 0.480263158 (73/152) 0.714833468
    2 HepG2.CSTF2.2
  • TGTGTCA
  • TGTGTCT
  • TGTGTGT
  • TGTCTGT
  • TCTGTGT
    		•  530.9999254 8184 0.53968254 (68/126) 0.211395567
    3 HepG2.CSTF2.3
  • TGTGTTC
    		•  323.5756636 2069 0.55 (66/120) 0.15765165