Data and motif summary of RBP CDC40

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RBP summary

RBP Name: CDC40
RBP description: Cell Division Cycle 40
UniProt ID: O60508
Entrez Gene: 51362
Species: Homo Sapiens
Protein domains:
Subcellular localization
(1 (nucleus) – 5 (cytoplasm): 		2(HepG2)
4(HeLa)

CLIP data summary

Data source: ENCODE Cell-type/Tissue: HepG2
Unique tags: 10477558 Peaks: 24577
Genomic distribution:
  • CDS exon
  • 5' UTR exon
  • Upstream 10K
  • 3' UTR exon
  • Downstream 10K
  • Intron
  • Deep intergenic
Crosslink sites: 1332 (CIMS, deletion) ; 1390 (CIMS, insertion); 21321 (CIMS, substitution); 5996 (CITS)

Motif summary

Cluster Motif Name Consensus Motif logo Score No. Sites AI scatter plot AI consistency AI p-value
1 HepG2.CDC40.0
  • GGGATAC
    		•  55.05636129 49 0.590909091 (13/22) 0.261733532
    1 HepG2.CDC40.2
  • AGGTTAC
    		•  44.31682715 36 0.363636364 (8/22) 0.933099747
    2 HepG2.CDC40.1
  • TAATCGG
    		•  45.50048469 35 0.923076923 (12/13) 0.001708984
    3 HepG2.CDC40.3
  • CCTTAGC
    		•  45.11641213 41 0.391304348 (9/23) 0.894980192