Data and motif summary of RBP BCCIP

  1. Home
  2. RBP > BCCIP

RBP summary

RBP Name: BCCIP
RBP description: BRCA2 And CDKN1A Interacting Protein
UniProt ID: Q9P287
Entrez Gene: 56647
Species: Homo Sapiens
Protein domains:
Subcellular localization
(1 (nucleus) – 5 (cytoplasm): 		3(HepG2)
3(HeLa)

CLIP data summary

Data source: ENCODE Cell-type/Tissue: HepG2
Unique tags: 5149087 Peaks: 30957
Genomic distribution:
  • CDS exon
  • 5' UTR exon
  • Upstream 10K
  • 3' UTR exon
  • Downstream 10K
  • Intron
  • Deep intergenic
Crosslink sites: 1272 (CIMS, deletion) ; 1226 (CIMS, insertion); 13901 (CIMS, substitution); 5523 (CITS)

Motif summary

Cluster Motif Name Consensus Motif logo Score No. Sites AI scatter plot AI consistency AI p-value
1 HepG2.BCCIP.0
  • GAGGCAG
  • GAGGGAG
    		•  298.0464651 1460 0.578947368 (22/38) 0.208846095
    1 HepG2.BCCIP.5
  • GGCAGGC
    		•  139.1662564 308 0.48 (12/25) 0.654981017
    1 HepG2.BCCIP.8
  • AGGCAGG
    		•  235.1930438 763 0.666666667 (20/30) 0.049368573
    2 HepG2.BCCIP.1
  • GCAGGGA
    		•  232.2181652 626 0.642857143 (9/14) 0.211975098
    3 HepG2.BCCIP.2
  • GGAGAGG
    		•  202.6591526 653 0.5 (9/18) 0.592735291
    3 HepG2.BCCIP.3
  • GGGAGAG
    		•  240.5803002 793 0.888888889 (8/9) 0.01953125
    4 HepG2.BCCIP.4
  • GAGAGGG
    		•  199.7806232 660 0.652173913 (15/23) 0.105019808
    4 HepG2.BCCIP.6
  • GAGGGCA
    		•  134.1720553 243 0.666666667 (2/3) 0.5
    4 HepG2.BCCIP.7
  • AGAGGGC
    		•  122.4160109 253 0.52173913 (12/23) 0.5