Data and motif summary of RBP AUH

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RBP summary

RBP Name: AUH
RBP description: AU RNA Binding Methylglutaconyl-CoA Hydratase
UniProt ID: Q13825
Entrez Gene: 549
Species: Homo Sapiens
Protein domains:
Subcellular localization
(1 (nucleus) – 5 (cytoplasm): 		5(HepG2)
5(HeLa)

CLIP data summary

Data source: ENCODE Cell-type/Tissue: HepG2
Unique tags: 4871769 Peaks: 11267
Genomic distribution:
  • CDS exon
  • 5' UTR exon
  • Upstream 10K
  • 3' UTR exon
  • Downstream 10K
  • Intron
  • Deep intergenic
Crosslink sites: 878 (CIMS, deletion) ; 1123 (CIMS, insertion); 10723 (CIMS, substitution); 3406 (CITS)

Motif summary

Cluster Motif Name Consensus Motif logo Score No. Sites AI scatter plot AI consistency AI p-value
1 HepG2.AUH.0
  • GCGTTAA
    		•  26.30267253 10 0.666666667 (2/3) 0.5
    1 HepG2.AUH.8
  • CGTGTAA
    		•  31.36461372 14 0.25 (1/4) 0.9375
    2 HepG2.AUH.2
  • GGCGCTA
  • GGCCCTA
    		•  43.20742448 37 0.473684211 (9/19) 0.676197052
    2 HepG2.AUH.6
  • GTTAGCG
    		•  32.54704689 12 0.428571429 (3/7) 0.7734375
    3 HepG2.AUH.7
  • TATCGGC
    		•  36.57430407 20 1 (2/2) 0.25
    4 HepG2.AUH.3
  • TGCGTAG
    		•  41.79812039 29 0.428571429 (3/7) 0.7734375
    5 HepG2.AUH.4
  • ATGAGTG
    		•  44.9072169 44 0.545454545 (6/11) 0.5
    6 HepG2.AUH.1
  • GGTTTCG
    		•  46.18631823 40 0.285714286 (2/7) 0.9375
    7 HepG2.AUH.5
  • CTCGGTC
    		•  40.26859689 33 0.2 (2/10) 0.989257813