Data and motif summary of RBP AGGF1

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RBP summary

RBP Name: AGGF1
RBP description: Angiogenic Factor With G-Patch And FHA Domains 1
UniProt ID: Q8N302
Entrez Gene: 55109
Species: Homo Sapiens
Protein domains:
Subcellular localization
(1 (nucleus) – 5 (cytoplasm): 		3(HepG2)
3(HeLa)

CLIP data summary

Data source: ENCODE Cell-type/Tissue: HepG2
Unique tags: 18271517 Peaks: 53427
Genomic distribution:
  • CDS exon
  • 5' UTR exon
  • Upstream 10K
  • 3' UTR exon
  • Downstream 10K
  • Intron
  • Deep intergenic
Crosslink sites: 1740 (CIMS, deletion) ; 3131 (CIMS, insertion); 39934 (CIMS, substitution); 15631 (CITS)

Motif summary

Cluster Motif Name Consensus Motif logo Score No. Sites AI scatter plot AI consistency AI p-value
1 HepG2.AGGF1.0
  • GAAGAAA
  • GAAGATA
    		•  146.3740176 555 0.586206897 (17/29) 0.22912916
    2 HepG2.AGGF1.1
  • AGAAGAA
  • GGAAGAA
    		•  156.3944705 649 0.375 (6/16) 0.894943237
    3 HepG2.AGGF1.4
  • AAGAACT
    		•  108.3710446 214 0.655172414 (19/29) 0.068022974
    4 HepG2.AGGF1.2
  • AAAGAAG
  • AATGAAG
    		•  133.5974424 516 0.448979592 (22/49) 0.804198545
    4 HepG2.AGGF1.3
  • AAGAAGA
  • AGGAAGA
  • TGGAAGA
    		•  194.501151 1127 0.52173913 (12/23) 0.5