Talks

Papers | Talks

Temporal regulation of transcriptome diversity during neural development.

Penn State University Neuroscience Seminar. University Park, PA (02/2016)

A high-resolution view of RNA regulatory networks.

Amgen Inc. Boston, MA (02/2016)

A high-resolution view of neural RNA regulatory networks.

Center for RNA Biology, Ohio State University. Columbus, OH (09/2015)

Dissecting a modular RNA-splicing program in neurodevelopment.

Columbia University MAGNet Retreat (05/2014)

Integrative Analysis of the Transcriptome & Protein-RNA Interactome to Elucidate RNA Regulation.

RNA-seq in Biomedical Research Workshop, Columbia University Genome Center (12/2013)

From RNA regulatory networks to rare mutations in neurological disorders.

Department of Biochemistry and Molecular Biophysics, Columbia University retreat. (10/2013)

RNA regulatory networks in the mammalian nervous system.

Columbia University MAGNet Retreat. (05/2013)

RNA regulation, neuronal cell fate, and brain tumor: A systems perspective.

Columbia University Graduate Admission Talk. (02/2013)

Global RNA regulatory networks in the mammalian brain: insights from an integrative systems biology approach.

Bioinformatics Division, TNLIST, Tsinghua University, Beijing, China. (10/2012)

Searching for the specificity of RNA-binding proteins.

Tsinghua Symposium on Genomics and Epigenomics. Beijing. China. (10/2012)

Searching for the specificity of RNA-binding proteins.

CSHA RNA Biology. Suzhou. China. (10/2012)

Global RNA regulatory networks in the mammalian brain: insights from an integrative systems biology approach.

CAS-MPG Partner Institute for Computational Biology. Shanghai, China. (09/2012)

Conference and Poster Presentations

• Zhang, C., Darnell, R.B. 2012. Searching for the specificity of non-specific RNA-binding proteins 2012 Annual Meeting of the RNA Society. May 29-June 3. Ann Arbor. MI. (selected talk).

• Zhang, C., Mele, A., Yano, M., Darnell, R.B. 2011. Single-nucleotide-resolution mapping of protein-RNA interactions using cross-linking induced mutation site (CIMS) analysis of HITS-CLIP data and its applications. Eukaryotic mRNA Processing. Aug 23-27. Cold Spring Harbor, NY (poster).

• Zhang, C. 2011. Mapping the exact base of in vivo protein-RNA interactions. Rockefeller University Postdoctoral Retreat. August 03-04 (selected talk).

• Zhang, C., Frias, M.A., Mele, A., Ruggiu, M., Eom, T., Marney, C.B., Wang, H., Licatalosi, D.D., Fak, J.J., Darnell, R.B., 2010. Integrative modeling defines the Nova splicing-regulatory network and its combinatorial controls. Gordon Research Conference: Biology of Post-transcriptional Gene Regulation. Newport, RI (poster, RNA Society Poster Award).

• Zhang, C., Frias, M., Ruggiu, M., Eom, T., Marney, C., Wang, H., Licatalosi, D., Mele., A., Fak, J., and Darnell, R.B., 2010. Integrative discovery and analysis of a global splicing-regulatory network in mouse brain. Systems Biology: Global Regulation of Gene Expression. Mar 23-27. Cold Spring Harbor, NY (poster).

• Zhang, C. 2009. Integrative discovery and analysis of a global splicing-regulatory network in mouse brain. Postdoctoral retreat, Rockefeller University, Sep. 21-22.(selected talk).

• Zhang, C., Ruggiu, M., Frias, M., Eom, T., Marney, C., Wang, H., Licatalosi, D., Mele., A., Fak, J., Darnell, J., and Darnell, R.B., 2009. Integrative discovery and analysis of a global splicing-regulatory network in mouse brain. Eukaryotic mRNA processing. Aug 18-22. Cold Spring Harbor, NY (selected talk).

• Zhang, C., Li, W.-H., Krainer, A.R. and Zhang, M.Q. 2008. RNA landscape of evolution for optimal exon and intron discrimination. Systems Biology: Global Regulation of Gene Expression. Mar27-30. Cold Spring Harbor, NY (poster).

• Zhang, C., Zhang Z., Castle, J., Sun, S., Johnson, J., Krainer, A.R. and Zhang, M.Q. 2007. Comprehensive prediction and characterization of pre-mRNA targets of the tissue-specific alternative splicing factors Fox-1/2. RECOMB Regulatory Genomics 2007. Oct 11-13. MIT/Broad Institute, Boston, NY (selected talk).

• Zhang, C., Zhang Z., Castle, J., Sun, S., Johnson, J., Krainer, A.R., and Zhang, M.Q. 2007. Comprehensive prediction and characterization of pre-mRNA targets of the tissue-specific alternative splicing factors Fox-1/2. Eukaryotic mRNA Processing. Aug 22-26. Cold Spring Harbor, NY (selected talk).

• Hasting, M.L.*, Krainer, A.R., and Zhang, M.Q. 2007. Dual-specificity splice sites are used as 3' and 5' splice sites. RNA 2007 Annual Meeting. May 29-June3. Madison WI. (selected oral presentation, *presenter)

• Zhang, C., Krainer, A.R., and Zhang, M.Q. 2006. Comparative genomics evidence for frequent splicing errors in mammals. RNA 2006 Annual Meeting. June 20-25. Seattle, WA.

• Zhang, C., Xuan, Z., and Zhang M.Q. 2005. Weak transcription factor binding sites enrich the genomes. Mechanisms of Eukaryotic Transcription. Aug 31-Sep4. Cold Spring Harbor Laboratory. NY 11724.

• Zhang, C., and Li S. 2004. Modeling of neuro-endoimmune network via subject oriented literature mining. The Fourth International Conference on Bioinformatics of Genome Regulation and Structure (BGRS'2004). Novosibirsk, Russia, July 25-30. [PDF]

• Zhang, C., Li, Y., and Zhang, X. 2004. gMap: extracting and interactively visualizing nonlinear relationships of genes from expression. Proc. RECOMB 2004, March 2004, pp.228-229. [PDF]

• Zhang, C., Zhang, X., Ma, X., and Li, Y. 2003. Establishing gene relevant networks about breast cancer via automatic literature mining” (in Chinese). China National Computer Congress (CNCC) 2003 [PDF]