Difference between revisions of "Talks"

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=Invited talks=
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<UL>
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<LI>Zhang, C. 2012.
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Global RNA regulatory networks in the mammalian brain: insights from an integrative systems biology approach.   
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<i>Oct 16. Bioinformatics Division, TNLIST, Tsinghua University, Beijing, China</i>.
 +
 
 +
<p>
 +
</LI>
 +
 
 +
<LI>Zhang, C. 2012.
 +
Searching for the specificity of RNA-binding proteins.
 +
<i>2012 CSHA RNA Biology.  Oct 8-12. Suzhou. China</i>.
 +
 
 +
<p>
 +
</LI>
 +
 
 +
 
 +
<LI>Zhang, C. 2012.
 +
Global RNA regulatory networks in the mammalian brain: insights from an integrative systems biology approach.   
 +
<i>Sept 28, CAS-MPG Partner Institute for Computational Biology. Shanghai, China</i>.
 +
 
 +
<p>
 +
</LI>
 +
 
 +
 
 +
 
 +
<LI>Zhang, C. 2011.
 +
Mapping microRNA target networks: HITS-CLIP and beyond.
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<i>ASN Annual meeting Advances in Research Conference: MicroRNA.  Nov 8-9.  Philadelphia. PA</i>.
 +
 
 +
<p>
 +
</LI>
 +
 
 +
<LI>Zhang, C. 2011.
 +
HITS-CLIP analysis of protein-RNA interactions: four computational challenges & two applications.
 +
<i>Rockefeller Bioinformatics/Biostatistics Collaborative Group meeting. Oct 21. Rockefeller University</i>.
 +
 
 +
<p>
 +
</LI>
 +
 
 +
<LI>Zhang, C. 2011.
 +
Elucidating global mammalian RNA-regulatory networks—an integrative systems biology approach
 +
<i>Rockefeller University. May 31 (special seminar)</i>. 
 +
 
 +
<p>
 +
</LI>
 +
 
 +
<LI>Zhang, C. 2010.
 +
Elucidating RNA-regulatory networks in the brain.
 +
<i>FASEB Posttranscriptional Control of Gene Expression: Mechanisms of mRNA Decay.  July 11-16. Carefree, AZ. </i>.
 +
 
 +
<p>
 +
</LI>
 +
 
 +
<LI>
 +
Zhang, C. 2009.
 +
HITS-CLIP defines in vivo protein-RNA interactions in mouse brain.
 +
<i>New York Illumina Genome Analyzer User Group Meeting. Nov. 18.</i>
 +
<p>
 +
</LI>
 +
 
 +
<LI>
 +
Zhang, C. 2009. From Bayesian network to gene regulatory network: a strategy of information fusion.
 +
<i>Integrative Statistical Analysis of Genome Scale Data. Cold Spring Harbor. June 20. (invited lecture)</i>.
 +
<p>
 +
</LI>
 +
 +
<LI>Zhang, C. 2007.
 +
Genome evolution and signals for fidelity and regulation of pre-mRNA splicing.
 +
Cold Spring Harbor Laboratory In-House Seminar. <i>Oct. 26. CSHL</i>.
 +
 
 +
<p>
 +
</LI>
 +
 
 +
<LI>
 +
Zhang, C. 2006.
 +
Profiling alternatively spliced mRNA isoforms for prostate cancer classification.
 +
Cambridge Healthtech Institute 6th Annual Workshop: Microarray Data and Interpretation. Aug23-25. Washington, DC.
 +
 
 +
<p>
 +
 
 +
</LI>
 +
</UL>
 +
 
 +
</html>
 +
 
 +
 
 +
 
 +
=Conference and Poster Presentations=
 +
 
 +
<html>
 +
 
 +
<UL>
 +
 
 +
<LI>
 +
Zhang, C., Darnell, R.B. 2012.
 +
Searching for the specificity of non-specific RNA-binding proteins
 +
<i>2012 Annual Meeting of the RNA Society.  May 29-June 3.  Ann Arbor. MI. (selected talk)</i>.
 +
<p>
 +
</LI>
 +
 
 +
<LI>
 +
Zhang, C., Mele, A., Yano, M., Darnell, R.B. 2011.
 +
Single-nucleotide-resolution mapping of protein-RNA interactions using cross-linking induced mutation site (CIMS) analysis of HITS-CLIP data and its applications.
 +
<i>Eukaryotic mRNA Processing. Aug 23-27. Cold Spring Harbor, NY (poster)</i>.
 +
<p>
 +
</LI>
 +
 
 +
<LI>
 +
Zhang, C. 2011.
 +
Mapping the exact base of in vivo protein-RNA interactions.
 +
<i>Rockefeller University Postdoctoral Retreat. August 03-04 (selected talk)</i>.
 +
<p>
 +
</LI>
 +
 +
<LI>
 +
Zhang, C., Frias, M.A., Mele, A., Ruggiu, M., Eom, T., Marney, C.B., Wang, H.,  Licatalosi, D.D., Fak, J.J., Darnell, R.B., 2010.
 +
Integrative modeling defines the Nova splicing-regulatory network and its combinatorial controls.
 +
<i>Gordon Research Conference: Biology of Post-transcriptional Gene Regulation. Newport, RI (poster, RNA Society Poster Award)</i>.
 +
<p>
 +
</LI>
 +
 
 +
<LI>
 +
Zhang, C., Frias, M., Ruggiu, M., Eom, T., Marney, C., Wang, H., Licatalosi, D., Mele., A., Fak, J., and Darnell, R.B., 2010.
 +
Integrative discovery and analysis of a global splicing-regulatory network in mouse brain.
 +
<i>Systems Biology: Global Regulation of Gene Expression. Mar 23-27. Cold Spring Harbor, NY (poster)</i>.
 +
<p>
 +
</LI>
 +
 
 +
<LI>
 +
Zhang, C. 2009.
 +
Integrative discovery and analysis of a global splicing-regulatory network in mouse brain.
 +
<i>Postdoctoral retreat, Rockefeller University, Sep. 21-22.(selected talk).</i>
 +
<p>
 +
</LI>
 +
 
 +
<LI>
 +
Zhang, C., Ruggiu, M., Frias, M., Eom, T., Marney, C., Wang, H., Licatalosi, D., Mele., A., Fak, J., Darnell, J., and Darnell, R.B., 2009.
 +
Integrative discovery and analysis of a global splicing-regulatory network in mouse brain.
 +
<i>Eukaryotic mRNA processing. Aug 18-22. Cold Spring Harbor, NY (selected talk)</i>.
 +
<p>
 +
</LI>
 +
 
 +
 
 +
 
 +
<LI>
 +
Zhang, C., Li, W.-H., Krainer, A.R. and Zhang, M.Q. 2008.
 +
RNA landscape of evolution for optimal exon and intron discrimination.
 +
<i>Systems Biology: Global Regulation of Gene Expression. Mar27-30. Cold Spring Harbor, NY (poster).</i>
 +
<p>
 +
</LI>
 +
 +
 +
<LI>
 +
Zhang, C., Zhang Z., Castle, J., Sun, S., Johnson, J., Krainer, A.R. and Zhang, M.Q. 2007.
 +
Comprehensive prediction and characterization of pre-mRNA targets of the tissue-specific alternative splicing factors Fox-1/2.
 +
<i>RECOMB Regulatory Genomics 2007. Oct 11-13. MIT/Broad Institute, Boston, NY (selected talk)</i>.
 +
 
 +
<p>
 +
</LI>
 +
 
 +
<LI>
 +
Zhang, C., Zhang Z., Castle, J., Sun, S., Johnson, J., Krainer, A.R., and Zhang, M.Q. 2007.
 +
Comprehensive prediction and characterization of pre-mRNA targets of the tissue-specific alternative splicing factors Fox-1/2.
 +
<i>Eukaryotic mRNA Processing. Aug 22-26. Cold Spring Harbor, NY (selected talk)</i>.
 +
<p>
 +
</LI>
 +
 
 +
 
 +
<LI>
 +
Hasting, M.L.*, Krainer, A.R., and Zhang, M.Q. 2007.
 +
Dual-specificity splice sites are used as 3&#39; and 5&#39; splice sites.
 +
<i>RNA 2007 Annual Meeting. May 29-June3. Madison WI. (selected oral presentation, *presenter)</i>
 +
 
 +
<p>
 +
</LI>
 +
 
 +
<LI>
 +
Zhang, C., Krainer, A.R., and Zhang, M.Q. 2006.
 +
Comparative genomics evidence for frequent splicing errors in mammals.
 +
<i>RNA 2006 Annual Meeting. June 20-25. Seattle, WA.</i>
 +
 
 +
<p>
 +
</LI>
 +
 
 +
<LI>
 +
Zhang, C., Xuan, Z., and Zhang M.Q. 2005.
 +
Weak transcription factor binding sites enrich the genomes.
 +
<i>Mechanisms of Eukaryotic Transcription. Aug 31-Sep4. Cold Spring Harbor Laboratory. NY 11724</i>.
 +
 
 +
<p>
 +
</LI>
 +
 
 +
<LI>
 +
Zhang, C., and Li S. 2004.
 +
Modeling of neuro-endoimmune network via subject oriented literature mining.
 +
<i>The Fourth International Conference on Bioinformatics of Genome Regulation and Structure (BGRS&#39;2004). Novosibirsk, Russia, July 25-30.
 +
[<a href="nei_model_2004_3.pdf">PDF</a>]
 +
 
 +
<p>
 +
</LI>
 +
 
 +
<LI>
 +
Zhang, C., Li, Y., and Zhang, X. 2004.
 +
gMap: extracting and interactively visualizing nonlinear relationships of genes from expression.
 +
<i>Proc. RECOMB 2004</i>, March 2004, pp.228-229.
 +
[<a href="gMap_recomb04_poster.pdf">PDF</a>]
 +
 
 +
<p>
 +
</LI>
 +
 
 +
 
 +
<LI>
 +
Zhang, C., Zhang, X., Ma, X., and Li, Y. 2003.
 +
Establishing gene relevant networks about breast cancer via automatic literature mining” (in Chinese).
 +
<i>China National Computer Congress (CNCC) 2003
 +
[<a href="mining_cncc03.pdf">PDF</a>]
 +
 
 +
<p>
 +
 
 +
</LI>
 +
</UL>
 +
</html>

Revision as of 22:50, 30 April 2013

Invited talks

  • Zhang, C. 2012. Global RNA regulatory networks in the mammalian brain: insights from an integrative systems biology approach. Oct 16. Bioinformatics Division, TNLIST, Tsinghua University, Beijing, China.

  • Zhang, C. 2012. Searching for the specificity of RNA-binding proteins. 2012 CSHA RNA Biology. Oct 8-12. Suzhou. China.

  • Zhang, C. 2012. Global RNA regulatory networks in the mammalian brain: insights from an integrative systems biology approach. Sept 28, CAS-MPG Partner Institute for Computational Biology. Shanghai, China.

  • Zhang, C. 2011. Mapping microRNA target networks: HITS-CLIP and beyond. ASN Annual meeting Advances in Research Conference: MicroRNA. Nov 8-9. Philadelphia. PA.

  • Zhang, C. 2011. HITS-CLIP analysis of protein-RNA interactions: four computational challenges & two applications. Rockefeller Bioinformatics/Biostatistics Collaborative Group meeting. Oct 21. Rockefeller University.

  • Zhang, C. 2011. Elucidating global mammalian RNA-regulatory networks—an integrative systems biology approach Rockefeller University. May 31 (special seminar).

  • Zhang, C. 2010. Elucidating RNA-regulatory networks in the brain. FASEB Posttranscriptional Control of Gene Expression: Mechanisms of mRNA Decay. July 11-16. Carefree, AZ. .

  • Zhang, C. 2009. HITS-CLIP defines in vivo protein-RNA interactions in mouse brain. New York Illumina Genome Analyzer User Group Meeting. Nov. 18.

  • Zhang, C. 2009. From Bayesian network to gene regulatory network: a strategy of information fusion. Integrative Statistical Analysis of Genome Scale Data. Cold Spring Harbor. June 20. (invited lecture).

  • Zhang, C. 2007. Genome evolution and signals for fidelity and regulation of pre-mRNA splicing. Cold Spring Harbor Laboratory In-House Seminar. Oct. 26. CSHL.

  • Zhang, C. 2006. Profiling alternatively spliced mRNA isoforms for prostate cancer classification. Cambridge Healthtech Institute 6th Annual Workshop: Microarray Data and Interpretation. Aug23-25. Washington, DC.


Conference and Poster Presentations

  • Zhang, C., Darnell, R.B. 2012. Searching for the specificity of non-specific RNA-binding proteins 2012 Annual Meeting of the RNA Society. May 29-June 3. Ann Arbor. MI. (selected talk).

  • Zhang, C., Mele, A., Yano, M., Darnell, R.B. 2011. Single-nucleotide-resolution mapping of protein-RNA interactions using cross-linking induced mutation site (CIMS) analysis of HITS-CLIP data and its applications. Eukaryotic mRNA Processing. Aug 23-27. Cold Spring Harbor, NY (poster).

  • Zhang, C. 2011. Mapping the exact base of in vivo protein-RNA interactions. Rockefeller University Postdoctoral Retreat. August 03-04 (selected talk).

  • Zhang, C., Frias, M.A., Mele, A., Ruggiu, M., Eom, T., Marney, C.B., Wang, H., Licatalosi, D.D., Fak, J.J., Darnell, R.B., 2010. Integrative modeling defines the Nova splicing-regulatory network and its combinatorial controls. Gordon Research Conference: Biology of Post-transcriptional Gene Regulation. Newport, RI (poster, RNA Society Poster Award).

  • Zhang, C., Frias, M., Ruggiu, M., Eom, T., Marney, C., Wang, H., Licatalosi, D., Mele., A., Fak, J., and Darnell, R.B., 2010. Integrative discovery and analysis of a global splicing-regulatory network in mouse brain. Systems Biology: Global Regulation of Gene Expression. Mar 23-27. Cold Spring Harbor, NY (poster).

  • Zhang, C. 2009. Integrative discovery and analysis of a global splicing-regulatory network in mouse brain. Postdoctoral retreat, Rockefeller University, Sep. 21-22.(selected talk).

  • Zhang, C., Ruggiu, M., Frias, M., Eom, T., Marney, C., Wang, H., Licatalosi, D., Mele., A., Fak, J., Darnell, J., and Darnell, R.B., 2009. Integrative discovery and analysis of a global splicing-regulatory network in mouse brain. Eukaryotic mRNA processing. Aug 18-22. Cold Spring Harbor, NY (selected talk).

  • Zhang, C., Li, W.-H., Krainer, A.R. and Zhang, M.Q. 2008. RNA landscape of evolution for optimal exon and intron discrimination. Systems Biology: Global Regulation of Gene Expression. Mar27-30. Cold Spring Harbor, NY (poster).

  • Zhang, C., Zhang Z., Castle, J., Sun, S., Johnson, J., Krainer, A.R. and Zhang, M.Q. 2007. Comprehensive prediction and characterization of pre-mRNA targets of the tissue-specific alternative splicing factors Fox-1/2. RECOMB Regulatory Genomics 2007. Oct 11-13. MIT/Broad Institute, Boston, NY (selected talk).

  • Zhang, C., Zhang Z., Castle, J., Sun, S., Johnson, J., Krainer, A.R., and Zhang, M.Q. 2007. Comprehensive prediction and characterization of pre-mRNA targets of the tissue-specific alternative splicing factors Fox-1/2. Eukaryotic mRNA Processing. Aug 22-26. Cold Spring Harbor, NY (selected talk).

  • Hasting, M.L.*, Krainer, A.R., and Zhang, M.Q. 2007. Dual-specificity splice sites are used as 3' and 5' splice sites. RNA 2007 Annual Meeting. May 29-June3. Madison WI. (selected oral presentation, *presenter)

  • Zhang, C., Krainer, A.R., and Zhang, M.Q. 2006. Comparative genomics evidence for frequent splicing errors in mammals. RNA 2006 Annual Meeting. June 20-25. Seattle, WA.

  • Zhang, C., Xuan, Z., and Zhang M.Q. 2005. Weak transcription factor binding sites enrich the genomes. Mechanisms of Eukaryotic Transcription. Aug 31-Sep4. Cold Spring Harbor Laboratory. NY 11724.

  • Zhang, C., and Li S. 2004. Modeling of neuro-endoimmune network via subject oriented literature mining. The Fourth International Conference on Bioinformatics of Genome Regulation and Structure (BGRS'2004). Novosibirsk, Russia, July 25-30. [PDF]

  • Zhang, C., Li, Y., and Zhang, X. 2004. gMap: extracting and interactively visualizing nonlinear relationships of genes from expression. Proc. RECOMB 2004, March 2004, pp.228-229. [PDF]

  • Zhang, C., Zhang, X., Ma, X., and Li, Y. 2003. Establishing gene relevant networks about breast cancer via automatic literature mining” (in Chinese). China National Computer Congress (CNCC) 2003 [PDF]

Retrieved from "https://zhanglab.c2b2.columbia.edu/index.php?title=Talks&oldid=748"