Difference between revisions of "Talks"

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=Invited talks=
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<UL>
 
<UL>
 
  
  
 
<LI>
 
<LI>
Zhang, C. 2013. 
 
RNA regulation, neuronal cell fate, and brain tumor: A systems perspective. 
 
  
<i>Integrative Program, Columbia University Graduate Admission Talk. Feb 15. </i>.
+
<div class="title">An RNA-centric view of neurodevelopment: From single nucleotide resolution maps to functions </div>
 +
 
 +
Crick Institute, London, UK (10/2019)
 +
 
 +
<br>
 +
<br>
 +
 
 
</LI>
 
</LI>
 +
<p>
 +
  
 
<LI>
 
<LI>
Zhang, C. 2012. 
 
Global RNA regulatory networks in the mammalian brain: insights from an integrative systems biology approach. 
 
  
<i>Bioinformatics Division, TNLIST, Tsinghua University, Oct 16. Beijing, China. </i>.
+
<div class="title">Alternative splicing in neurodevelopment and function
</LI>
+
</div>
 +
 
 +
Wellcome Trust Workshop on Neuronal Maturation. London, UK (10/2019)
  
<LI>Zhang, C. 2012.
+
<br>
Global RNA regulatory networks in the mammalian brain: insights from an integrative systems biology approach.   
+
<br>
<i>Oct 16. Bioinformatics Division, TNLIST, Tsinghua University, Beijing, China</i>.
+
  
<p>
 
 
</LI>
 
</LI>
 +
<p>
  
<LI>Zhang, C. 2012.
+
<LI>
Searching for the specificity of RNA-binding proteins.
+
<i>2012 CSHA RNA Biology.  Oct 8-12. Suzhou. China</i>.
+
  
<p>
+
<div class="title">Learning from single nucleotide resolution maps: RBP specificity and beyond </div>
</LI>
+
  
 +
EMBO Workshop on RNP Network Dynamics in Development and Disease. Ljubljana, Slovenia (10/2019)
  
<LI>Zhang, C. 2012.
+
<br>
Global RNA regulatory networks in the mammalian brain: insights from an integrative systems biology approach.   
+
<br>
<i>Sept 28, CAS-MPG Partner Institute for Computational Biology. Shanghai, China</i>.
+
  
<p>
 
 
</LI>
 
</LI>
 +
<p>
  
  
 +
<LI>
  
<LI>Zhang, C. 2011.
+
<div class="title">An RNA-centric view of neurodevelopment: from single-nucleotide resolution maps to functions </div>
Mapping microRNA target networks: HITS-CLIP and beyond.
+
<i>ASN Annual meeting Advances in Research Conference: MicroRNA.  Nov 8-9.  Philadelphia. PA</i>.
+
  
<p>
+
UCLA Bioinformatics Interdepartmental Graduate Program Seminar Series. Los Angeles (3/2019)
</LI>
+
  
<LI>Zhang, C. 2011.
+
<br>
HITS-CLIP analysis of protein-RNA interactions: four computational challenges & two applications.
+
<br>
<i>Rockefeller Bioinformatics/Biostatistics Collaborative Group meeting. Oct 21. Rockefeller University</i>.
+
  
<p>
 
 
</LI>
 
</LI>
 +
<p>
  
<LI>Zhang, C. 2011.
+
<LI>
Elucidating global mammalian RNA-regulatory networks—an integrative systems biology approach
+
<i>Rockefeller University. May 31 (special seminar)</i>. 
+
  
<p>
+
<div class="title">An RNA-centric view of neurodevelopment: from single-nucleotide resolution maps to functions </div>
</LI>
+
  
<LI>Zhang, C. 2010.
+
The Department of Microbiology, Biochemistry and Molecular Genetics and the Public Health Research Institute Seminar Series, Rutgers New Jersey Medical School,. Newark, NJ (1/2019)
Elucidating RNA-regulatory networks in the brain.  
+
<i>FASEB Posttranscriptional Control of Gene Expression: Mechanisms of mRNA Decay.  July 11-16. Carefree, AZ. </i>.
+
  
<p>
+
<br>
</LI>
+
<br>
  
<LI>
 
Zhang, C. 2009.
 
HITS-CLIP defines in vivo protein-RNA interactions in mouse brain.
 
<i>New York Illumina Genome Analyzer User Group Meeting. Nov. 18.</i>
 
<p>
 
 
</LI>
 
</LI>
 +
<p>
 +
  
 
<LI>
 
<LI>
Zhang, C. 2009. From Bayesian network to gene regulatory network: a strategy of information fusion.
 
<i>Integrative Statistical Analysis of Genome Scale Data. Cold Spring Harbor. June 20. (invited lecture)</i>.
 
<p>
 
</LI>
 
 
<LI>Zhang, C. 2007.
 
Genome evolution and signals for fidelity and regulation of pre-mRNA splicing.
 
Cold Spring Harbor Laboratory In-House Seminar. <i>Oct. 26. CSHL</i>.
 
  
<p>
+
<div class="title">An RNA-centric view of neurodevelopment: from single-nucleotide resolution maps to functions </div>
 +
 
 +
Weill Cornell Medicine Institute for Computational Biomedicine Seminar Series. New York, NY (10/2018)
 +
 
 +
<br>
 +
<br>
 +
 
 
</LI>
 
</LI>
 +
<p>
  
 
<LI>
 
<LI>
Zhang, C. 2006.
 
Profiling alternatively spliced mRNA isoforms for prostate cancer classification.
 
Cambridge Healthtech Institute 6th Annual Workshop: Microarray Data and Interpretation. Aug23-25. Washington, DC.
 
  
<p>
+
<div class="title">An RNA-centric view of neurodevelopment: from single-nucleotide resolution maps to functions </div>
 +
 
 +
External Speaker,  Graduate Program in Genetics and Molecular
 +
Biology (GMB) / Joint seminar, Department of Pharmacology. Emory University. Atlanta, GA (9/2018)
 +
 
 +
<br>
 +
<br>
  
 
</LI>
 
</LI>
</UL>
+
<p>
  
</html>
+
<LI>
  
=Conference and Poster Presentations=
+
<div class="title">Modeling RNA-binding protein specificity using single-nucleotide-resolution binding maps: a case study of LIN28 and two subclasses of let-7 microRNAs </div>
  
 +
ISMB. Chicago, IL (7/2018)
  
<html>
+
<br>
<UL>
+
<br>
  
 +
</LI>
 +
<p>
  
  
 +
<LI>
  
 +
<div class="title">Timing is key: dynamic regulation of transcriptome diversity during neural development. </div>
  
<LI>
+
New York Genome Center Five Points Lecture Series. New York, NY (4/2018)
Zhang, C., Darnell, R.B. 2012.
+
Searching for the specificity of non-specific RNA-binding proteins
+
<i>2012 Annual Meeting of the RNA Society.  May 29-June 3.  Ann Arbor. MI. (selected talk)</i>.
+
<p>
+
</LI>
+
  
<LI>
+
<br>
Zhang, C., Mele, A., Yano, M., Darnell, R.B. 2011.
+
<br>
Single-nucleotide-resolution mapping of protein-RNA interactions using cross-linking induced mutation site (CIMS) analysis of HITS-CLIP data and its applications.
+
<i>Eukaryotic mRNA Processing. Aug 23-27. Cold Spring Harbor, NY (poster)</i>.
+
<p>
+
</LI>
+
  
<LI>
 
Zhang, C. 2011.
 
Mapping the exact base of in vivo protein-RNA interactions.
 
<i>Rockefeller University Postdoctoral Retreat. August 03-04 (selected talk)</i>.
 
<p>
 
 
</LI>
 
</LI>
 
<LI>
 
Zhang, C., Frias, M.A., Mele, A., Ruggiu, M., Eom, T., Marney, C.B., Wang, H.,  Licatalosi, D.D., Fak, J.J., Darnell, R.B., 2010.
 
Integrative modeling defines the Nova splicing-regulatory network and its combinatorial controls.
 
<i>Gordon Research Conference: Biology of Post-transcriptional Gene Regulation. Newport, RI (poster, RNA Society Poster Award)</i>.
 
 
<p>
 
<p>
</LI>
 
  
<LI>
 
Zhang, C., Frias, M., Ruggiu, M., Eom, T., Marney, C., Wang, H., Licatalosi, D., Mele., A., Fak, J., and Darnell, R.B., 2010.
 
Integrative discovery and analysis of a global splicing-regulatory network in mouse brain.
 
<i>Systems Biology: Global Regulation of Gene Expression. Mar 23-27. Cold Spring Harbor, NY (poster)</i>.
 
<p>
 
</LI>
 
  
 
<LI>
 
<LI>
Zhang, C. 2009.
+
 
Integrative discovery and analysis of a global splicing-regulatory network in mouse brain.  
+
<div class="title">Rbfox splicing factors promote neuronal maturation and axon initial segment assembly. </div>
<i>Postdoctoral retreat, Rockefeller University, Sep. 21-22.(selected talk).</i>
+
 
 +
American Society for Neurochemistry (ASN) Annual Meeting. Riverside, CA (3/2018)
 +
 
 +
<br>
 +
<br>
 +
</LI>
 
<p>
 
<p>
</LI>
+
 
  
 
<LI>
 
<LI>
Zhang, C., Ruggiu, M., Frias, M., Eom, T., Marney, C., Wang, H., Licatalosi, D., Mele., A., Fak, J., Darnell, J., and Darnell, R.B., 2009.
+
 
Integrative discovery and analysis of a global splicing-regulatory network in mouse brain.  
+
<div class="title">Dynamic RNA regulation during neurodevelopment. </div>
<i>Eukaryotic mRNA processing. Aug 18-22. Cold Spring Harbor, NY (selected talk)</i>.
+
 
<p>
+
Otto Warburg Summer School Symposium. Shanghai (8/2017)
 +
 
 +
<br>
 +
<br>
 
</LI>
 
</LI>
 +
<p>
  
 +
<LI>
  
 +
<div class="title">Protein-RNA interactions: From single-nucleotide resolution maps to predictive models of binding sites</div>
 +
 +
Otto Warburg Summer School. Shanghai (8/2017)
 +
 +
<br>
 +
<br>
 +
</LI>
 +
<p>
  
 
<LI>
 
<LI>
Zhang, C., Li, W.-H., Krainer, A.R. and Zhang, M.Q. 2008.
+
 
RNA landscape of evolution for optimal exon and intron discrimination.
+
<div class="title">Neuronal RNA-regulatory networks in development and disease</div>
<i>Systems Biology: Global Regulation of Gene Expression. Mar27-30. Cold Spring Harbor, NY (poster).</i>
+
 
 +
Graduate Program Recruitment Seminars, Department of Systems Biology, Columbia University (1/2017)
 +
 
 +
<br>
 +
<br>
 +
</LI>
 
<p>
 
<p>
 +
 +
<LI>
 +
 +
<div class="title">Alternative RNA splicing: an amplifier of genomic complexity</div>
 +
 +
Tsinghua University Biology (THUBio) Reunion, New York, NY (7/2017)
 +
 +
<br>
 +
<br>
 
</LI>
 
</LI>
+
<p>
+
 
 +
 
 
<LI>
 
<LI>
Zhang, C., Zhang Z., Castle, J., Sun, S., Johnson, J., Krainer, A.R. and Zhang, M.Q. 2007.
 
Comprehensive prediction and characterization of pre-mRNA targets of the tissue-specific alternative splicing factors Fox-1/2.
 
<i>RECOMB Regulatory Genomics 2007. Oct 11-13. MIT/Broad Institute, Boston, NY (selected talk)</i>.
 
  
 +
<div class="title">An integrative approach to dissecting neuronal transcriptome diversity</div>
 +
 +
Graduate Student Seminar Series, Department of Systems Biology, Columbia University (10/2016)
 +
 +
<br>
 +
<br>
 +
</LI>
 
<p>
 
<p>
 +
 +
 +
<LI>
 +
 +
<div class="title">Dynamic regulation of alternative splicing during neural development</div>
 +
 +
Department Retreat, Department of Systems Biology, Columbia University (09/2016)
 +
 +
<br>
 +
<br>
 
</LI>
 
</LI>
 +
<p>
 +
  
 
<LI>
 
<LI>
Zhang, C., Zhang Z., Castle, J., Sun, S., Johnson, J., Krainer, A.R., and Zhang, M.Q. 2007.
+
 
Comprehensive prediction and characterization of pre-mRNA targets of the tissue-specific alternative splicing factors Fox-1/2.
+
<div class="title">Dissecting neuronal transcriptome diversity using an in vitro ES model </div>
<i>Eukaryotic mRNA Processing. Aug 22-26. Cold Spring Harbor, NY (selected talk)</i>.
+
 
 +
Summer Research Bootcamp, Doctoral Programof Neurobiology and Behavior, Columbia University (08/2016)
 +
 
 +
<br>
 +
<br>
 +
</LI>
 
<p>
 
<p>
 +
 +
<LI>
 +
 +
<div class="title">The splicing code: how far are we off? </div>
 +
 +
Bioinformatics Division, TNLIST, Tsinghua University, Beijing, China (07/2016)
 +
 +
<br>
 +
<br>
 
</LI>
 
</LI>
 +
<p>
  
  
 
<LI>
 
<LI>
Hasting, M.L.*, Krainer, A.R., and Zhang, M.Q. 2007.
 
Dual-specificity splice sites are used as 3&#39; and 5&#39; splice sites.
 
<i>RNA 2007 Annual Meeting. May 29-June3. Madison WI. (selected oral presentation, *presenter)</i>
 
  
 +
<div class="title">A high-resolution view of neuronal RNA regulatory networks. </div>
 +
 +
Department of Biological Sciences Seminar Series, St John’s University. Queens, NY (04/2016)
 +
 +
<br>
 +
<br>
 +
</LI>
 
<p>
 
<p>
 +
 +
 +
<LI>
 +
 +
<div class="title">Temporal regulation of transcriptome diversity during neural development. </div>
 +
 +
Penn State University Neuroscience Seminar. University Park, PA (02/2016)
 +
 +
<br>
 +
<br>
 
</LI>
 
</LI>
 +
<p>
  
 
<LI>
 
<LI>
Zhang, C., Krainer, A.R., and Zhang, M.Q. 2006.
+
 
Comparative genomics evidence for frequent splicing errors in mammals.
+
<div class="title">A high-resolution view of RNA regulatory networks. </div>
<i>RNA 2006 Annual Meeting. June 20-25. Seattle, WA.</i>
+
 
 +
Amgen Inc. Boston, MA  (02/2016)
 +
 
 +
<br>
 +
<br>
 +
</LI>
  
 
<p>
 
<p>
 +
 +
<LI>
 +
 +
<div class="title">A high-resolution view of neural RNA regulatory networks. </div>
 +
 +
Center for RNA Biology, Ohio State University. Columbus, OH  (09/2015)
 +
 +
<br>
 +
<br>
 
</LI>
 
</LI>
  
 +
<p>
 
<LI>
 
<LI>
Zhang, C., Xuan, Z., and Zhang M.Q. 2005.
+
 
Weak transcription factor binding sites enrich the genomes.
+
<div class="title">Dissecting a modular RNA-splicing program in neurodevelopment. </div>
<i>Mechanisms of Eukaryotic Transcription. Aug 31-Sep4. Cold Spring Harbor Laboratory. NY 11724</i>.
+
 
 +
Columbia University MAGNet Retreat  (05/2014)
 +
 
 +
<br>
 +
<br>
 +
</LI>
  
 
<p>
 
<p>
 +
<LI>
 +
 +
<div class="title">Integrative Analysis of the Transcriptome & Protein-RNA Interactome to Elucidate RNA Regulation. </div>
 +
 +
RNA-seq in Biomedical Research Workshop, Columbia University Genome Center  (12/2013)
 +
 +
<br>
 +
<br>
 
</LI>
 
</LI>
  
 +
<p>
 
<LI>
 
<LI>
Zhang, C., and Li S. 2004.
+
 
Modeling of neuro-endoimmune network via subject oriented literature mining.  
+
<div class="title">From RNA regulatory networks to rare mutations in neurological disorders. </div>
<i>The Fourth International Conference on Bioinformatics of Genome Regulation and Structure (BGRS&#39;2004). Novosibirsk, Russia, July 25-30.  
+
 
[<a href="nei_model_2004_3.pdf">PDF</a>]
+
Department of Biochemistry and Molecular Biophysics, Columbia University retreat. (10/2013)
 +
 
 +
<br>
 +
<br>
 +
</LI>
  
 
<p>
 
<p>
 +
<LI>
 +
 +
<div class="title">RNA regulatory networks in the mammalian nervous system. </div>
 +
 +
Columbia University MAGNet Retreat.  (05/2013)
 +
 +
<br>
 +
<br>
 
</LI>
 
</LI>
  
 +
<p>
 
<LI>
 
<LI>
Zhang, C., Li, Y., and Zhang, X. 2004.
+
 
gMap: extracting and interactively visualizing nonlinear relationships of genes from expression.
+
<div class="title">RNA regulation, neuronal cell fate, and brain tumor: A systems perspective. </div>
<i>Proc. RECOMB 2004</i>, March 2004, pp.228-229.
+
 
[<a href="gMap_recomb04_poster.pdf">PDF</a>]
+
Columbia University Graduate Admission Talk. (02/2013)
 +
 
 +
<br>
 +
<br>
 +
</LI>
  
 
<p>
 
<p>
 +
<LI>
 +
 +
<div class="title">Global RNA regulatory networks in the mammalian brain: insights from an integrative systems biology approach.  </div>
 +
 +
Bioinformatics Division, TNLIST, Tsinghua University, Beijing, China. (10/2012)
 +
 +
<br>
 +
<br>
 
</LI>
 
</LI>
  
 +
<p>
 +
<LI>
  
 +
<div class="title">Searching for the specificity of RNA-binding proteins.  </div>
 +
 +
Tsinghua Symposium on Genomics and Epigenomics. Beijing. China. (10/2012)
 +
 +
<br>
 +
<br>
 +
</LI>
 +
 +
<p>
 
<LI>
 
<LI>
Zhang, C., Zhang, X., Ma, X., and Li, Y. 2003.
+
 
Establishing gene relevant networks about breast cancer via automatic literature mining” (in Chinese).
+
<div class="title">Searching for the specificity of RNA-binding proteins. </div>
<i>China National Computer Congress (CNCC) 2003
+
 
[<a href="mining_cncc03.pdf">PDF</a>]
+
CSHA RNA Biology. Suzhou. China. (10/2012)
 +
 
 +
<br>
 +
<br>
 +
</LI>
  
 
<p>
 
<p>
 +
<LI>
  
 +
<div class="title">Global RNA regulatory networks in the mammalian brain: insights from an integrative systems biology approach.  </div>
 +
 +
CAS-MPG Partner Institute for Computational Biology. Shanghai, China. (09/2012)
 +
 +
<br>
 +
<br>
 
</LI>
 
</LI>
 +
 +
<p>
 +
 
</UL>
 
</UL>
 
</html>
 
</html>

Revision as of 22:41, 19 December 2019


Papers | Talks


  • An RNA-centric view of neurodevelopment: From single nucleotide resolution maps to functions
    Crick Institute, London, UK (10/2019)

  • Alternative splicing in neurodevelopment and function
    Wellcome Trust Workshop on Neuronal Maturation. London, UK (10/2019)

  • Learning from single nucleotide resolution maps: RBP specificity and beyond
    EMBO Workshop on RNP Network Dynamics in Development and Disease. Ljubljana, Slovenia (10/2019)

  • An RNA-centric view of neurodevelopment: from single-nucleotide resolution maps to functions
    UCLA Bioinformatics Interdepartmental Graduate Program Seminar Series. Los Angeles (3/2019)

  • An RNA-centric view of neurodevelopment: from single-nucleotide resolution maps to functions
    The Department of Microbiology, Biochemistry and Molecular Genetics and the Public Health Research Institute Seminar Series, Rutgers New Jersey Medical School,. Newark, NJ (1/2019)

  • An RNA-centric view of neurodevelopment: from single-nucleotide resolution maps to functions
    Weill Cornell Medicine Institute for Computational Biomedicine Seminar Series. New York, NY (10/2018)

  • An RNA-centric view of neurodevelopment: from single-nucleotide resolution maps to functions
    External Speaker, Graduate Program in Genetics and Molecular Biology (GMB) / Joint seminar, Department of Pharmacology. Emory University. Atlanta, GA (9/2018)

  • Modeling RNA-binding protein specificity using single-nucleotide-resolution binding maps: a case study of LIN28 and two subclasses of let-7 microRNAs
    ISMB. Chicago, IL (7/2018)

  • Timing is key: dynamic regulation of transcriptome diversity during neural development.
    New York Genome Center Five Points Lecture Series. New York, NY (4/2018)

  • Rbfox splicing factors promote neuronal maturation and axon initial segment assembly.
    American Society for Neurochemistry (ASN) Annual Meeting. Riverside, CA (3/2018)

  • Dynamic RNA regulation during neurodevelopment.
    Otto Warburg Summer School Symposium. Shanghai (8/2017)

  • Protein-RNA interactions: From single-nucleotide resolution maps to predictive models of binding sites
    Otto Warburg Summer School. Shanghai (8/2017)

  • Neuronal RNA-regulatory networks in development and disease
    Graduate Program Recruitment Seminars, Department of Systems Biology, Columbia University (1/2017)

  • Alternative RNA splicing: an amplifier of genomic complexity
    Tsinghua University Biology (THUBio) Reunion, New York, NY (7/2017)

  • An integrative approach to dissecting neuronal transcriptome diversity
    Graduate Student Seminar Series, Department of Systems Biology, Columbia University (10/2016)

  • Dynamic regulation of alternative splicing during neural development
    Department Retreat, Department of Systems Biology, Columbia University (09/2016)

  • Dissecting neuronal transcriptome diversity using an in vitro ES model
    Summer Research Bootcamp, Doctoral Programof Neurobiology and Behavior, Columbia University (08/2016)

  • The splicing code: how far are we off?
    Bioinformatics Division, TNLIST, Tsinghua University, Beijing, China (07/2016)

  • A high-resolution view of neuronal RNA regulatory networks.
    Department of Biological Sciences Seminar Series, St John’s University. Queens, NY (04/2016)

  • Temporal regulation of transcriptome diversity during neural development.
    Penn State University Neuroscience Seminar. University Park, PA (02/2016)

  • A high-resolution view of RNA regulatory networks.
    Amgen Inc. Boston, MA (02/2016)

  • A high-resolution view of neural RNA regulatory networks.
    Center for RNA Biology, Ohio State University. Columbus, OH (09/2015)

  • Dissecting a modular RNA-splicing program in neurodevelopment.
    Columbia University MAGNet Retreat (05/2014)

  • Integrative Analysis of the Transcriptome & Protein-RNA Interactome to Elucidate RNA Regulation.
    RNA-seq in Biomedical Research Workshop, Columbia University Genome Center (12/2013)

  • From RNA regulatory networks to rare mutations in neurological disorders.
    Department of Biochemistry and Molecular Biophysics, Columbia University retreat. (10/2013)

  • RNA regulatory networks in the mammalian nervous system.
    Columbia University MAGNet Retreat. (05/2013)

  • RNA regulation, neuronal cell fate, and brain tumor: A systems perspective.
    Columbia University Graduate Admission Talk. (02/2013)

  • Global RNA regulatory networks in the mammalian brain: insights from an integrative systems biology approach.
    Bioinformatics Division, TNLIST, Tsinghua University, Beijing, China. (10/2012)

  • Searching for the specificity of RNA-binding proteins.
    Tsinghua Symposium on Genomics and Epigenomics. Beijing. China. (10/2012)

  • Searching for the specificity of RNA-binding proteins.
    CSHA RNA Biology. Suzhou. China. (10/2012)

  • Global RNA regulatory networks in the mammalian brain: insights from an integrative systems biology approach.
    CAS-MPG Partner Institute for Computational Biology. Shanghai, China. (09/2012)