Difference between revisions of "Talks"

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(Invited talks)
(Invited talks)
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[[Publications|Papers]] | [[Talks]]
 
[[Publications|Papers]] | [[Talks]]
 
 
=Invited talks=
 
  
  
 
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<div class="title">Temporal regulation of transcriptome diversity during neural development. </div>
  
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Penn State University Neuroscience Seminar. University Park, PA (02/2016)
Zhang, C. 2013. 
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RNA regulation, neuronal cell fate, and brain tumor: A systems perspective. 
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<i>Integrative Program, Columbia University Graduate Admission Talk. Feb 15. </i>.
 
 
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<p>
  
 
<LI>
 
<LI>
Zhang, C. 2012. 
 
Global RNA regulatory networks in the mammalian brain: insights from an integrative systems biology approach. 
 
  
<i>Bioinformatics Division, TNLIST, Tsinghua University, Oct 16. Beijing, China. </i>.
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<div class="title">A high-resolution view of RNA regulatory networks. </div>
</LI>
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<LI>Zhang, C. 2012.
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Amgen Inc. Boston, MA  (02/2016)
Global RNA regulatory networks in the mammalian brain: insights from an integrative systems biology approach.   
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<i>Oct 16. Bioinformatics Division, TNLIST, Tsinghua University, Beijing, China</i>.
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<p>
 
 
</LI>
 
</LI>
  
<LI>Zhang, C. 2012.
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<p>
Searching for the specificity of RNA-binding proteins.  
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<i>2012 CSHA RNA Biology.  Oct 8-12. Suzhou. China</i>.
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<div class="title">A high-resolution view of neural RNA regulatory networks. </div>
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Center for RNA Biology, Ohio State University. Columbus, OH (09/2015)
  
<p>
 
 
</LI>
 
</LI>
  
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<p>
  
<LI>Zhang, C. 2012.
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<div class="title">Dissecting a modular RNA-splicing program in neurodevelopment. </div>
Global RNA regulatory networks in the mammalian brain: insights from an integrative systems biology approach.  
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<i>Sept 28, CAS-MPG Partner Institute for Computational Biology. Shanghai, China</i>.
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Columbia University MAGNet Retreat  (05/2014)
  
<p>
 
 
</LI>
 
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<p>
  
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<div class="title">Integrative Analysis of the Transcriptome & Protein-RNA Interactome to Elucidate RNA Regulation. </div>
  
<LI>Zhang, C. 2011.
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RNA-seq in Biomedical Research Workshop, Columbia University Genome Center (12/2013)
Mapping microRNA target networks: HITS-CLIP and beyond.
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<i>ASN Annual meeting Advances in Research Conference: MicroRNA.  Nov 8-9. Philadelphia. PA</i>.
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<p>
 
 
</LI>
 
</LI>
  
<LI>Zhang, C. 2011.
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<p>
HITS-CLIP analysis of protein-RNA interactions: four computational challenges & two applications.
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<i>Rockefeller Bioinformatics/Biostatistics Collaborative Group meeting. Oct 21. Rockefeller University</i>.
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<p>
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<div class="title">From RNA regulatory networks to rare mutations in neurological disorders. </div>
</LI>
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<LI>Zhang, C. 2011.
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Department of Biochemistry and Molecular Biophysics, Columbia University retreat. (10/2013)
Elucidating global mammalian RNA-regulatory networks—an integrative systems biology approach
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<i>Rockefeller University. May 31 (special seminar)</i>. 
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<p>
 
 
</LI>
 
</LI>
  
<LI>Zhang, C. 2010.
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<p>
Elucidating RNA-regulatory networks in the brain.  
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<i>FASEB Posttranscriptional Control of Gene Expression: Mechanisms of mRNA DecayJuly 11-16. Carefree, AZ. </i>.
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<div class="title">RNA regulatory networks in the mammalian nervous system. </div>
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Columbia University MAGNet Retreat(05/2013)
  
<p>
 
 
</LI>
 
</LI>
  
<LI>
 
Zhang, C. 2009.
 
HITS-CLIP defines in vivo protein-RNA interactions in mouse brain.
 
<i>New York Illumina Genome Analyzer User Group Meeting. Nov. 18.</i>
 
 
<p>
 
<p>
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<div class="title">RNA regulation, neuronal cell fate, and brain tumor: A systems perspective.  </div>
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Columbia University Graduate Admission Talk.  (02/2013)
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</LI>
 
</LI>
  
<LI>
 
Zhang, C. 2009. From Bayesian network to gene regulatory network: a strategy of information fusion.
 
<i>Integrative Statistical Analysis of Genome Scale Data. Cold Spring Harbor. June 20. (invited lecture)</i>.
 
 
<p>
 
<p>
</LI>  
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<div class="title">Global RNA regulatory networks in the mammalian brain: insights from an integrative systems biology approach.  </div>
<LI>Zhang, C. 2007.  
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Genome evolution and signals for fidelity and regulation of pre-mRNA splicing.
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Bioinformatics Division, TNLIST, Tsinghua University, Beijing, China. (10/2012)
Cold Spring Harbor Laboratory In-House Seminar. <i>Oct. 26. CSHL</i>.
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</LI>
  
 
<p>
 
<p>
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<div class="title">Searching for the specificity of RNA-binding proteins.  </div>
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Tsinghua Symposium on Genomics and Epigenomics. Beijing. China. (10/2012)
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</LI>
 
</LI>
  
<LI>
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<p>
Zhang, C. 2006.
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Profiling alternatively spliced mRNA isoforms for prostate cancer classification.  
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<div class="title">Searching for the specificity of RNA-binding proteins. </div>
Cambridge Healthtech Institute 6th Annual Workshop: Microarray Data and Interpretation. Aug23-25. Washington, DC.
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CSHA RNA Biology. Suzhou. China. (10/2012)
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</LI>
  
 
<p>
 
<p>
 +
 +
<div class="title">Global RNA regulatory networks in the mammalian brain: insights from an integrative systems biology approach.  </div>
 +
 +
CAS-MPG Partner Institute for Computational Biology. Shanghai, China. (09/2012)
  
 
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<p>
 
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Revision as of 01:14, 5 March 2016


Papers | Talks


  • Temporal regulation of transcriptome diversity during neural development.
    Penn State University Neuroscience Seminar. University Park, PA (02/2016)
  • A high-resolution view of RNA regulatory networks.
    Amgen Inc. Boston, MA (02/2016)
  • A high-resolution view of neural RNA regulatory networks.
    Center for RNA Biology, Ohio State University. Columbus, OH (09/2015)

    Dissecting a modular RNA-splicing program in neurodevelopment.
    Columbia University MAGNet Retreat (05/2014)

    Integrative Analysis of the Transcriptome & Protein-RNA Interactome to Elucidate RNA Regulation.
    RNA-seq in Biomedical Research Workshop, Columbia University Genome Center (12/2013)

    From RNA regulatory networks to rare mutations in neurological disorders.
    Department of Biochemistry and Molecular Biophysics, Columbia University retreat. (10/2013)

    RNA regulatory networks in the mammalian nervous system.
    Columbia University MAGNet Retreat. (05/2013)

    RNA regulation, neuronal cell fate, and brain tumor: A systems perspective.
    Columbia University Graduate Admission Talk. (02/2013)

    Global RNA regulatory networks in the mammalian brain: insights from an integrative systems biology approach.
    Bioinformatics Division, TNLIST, Tsinghua University, Beijing, China. (10/2012)

    Searching for the specificity of RNA-binding proteins.
    Tsinghua Symposium on Genomics and Epigenomics. Beijing. China. (10/2012)

    Searching for the specificity of RNA-binding proteins.
    CSHA RNA Biology. Suzhou. China. (10/2012)

    Global RNA regulatory networks in the mammalian brain: insights from an integrative systems biology approach.
    CAS-MPG Partner Institute for Computational Biology. Shanghai, China. (09/2012)

    Conference and Poster Presentations

    • Zhang, C., Darnell, R.B. 2012. Searching for the specificity of non-specific RNA-binding proteins 2012 Annual Meeting of the RNA Society. May 29-June 3. Ann Arbor. MI. (selected talk).

    • Zhang, C., Mele, A., Yano, M., Darnell, R.B. 2011. Single-nucleotide-resolution mapping of protein-RNA interactions using cross-linking induced mutation site (CIMS) analysis of HITS-CLIP data and its applications. Eukaryotic mRNA Processing. Aug 23-27. Cold Spring Harbor, NY (poster).

    • Zhang, C. 2011. Mapping the exact base of in vivo protein-RNA interactions. Rockefeller University Postdoctoral Retreat. August 03-04 (selected talk).

    • Zhang, C., Frias, M.A., Mele, A., Ruggiu, M., Eom, T., Marney, C.B., Wang, H., Licatalosi, D.D., Fak, J.J., Darnell, R.B., 2010. Integrative modeling defines the Nova splicing-regulatory network and its combinatorial controls. Gordon Research Conference: Biology of Post-transcriptional Gene Regulation. Newport, RI (poster, RNA Society Poster Award).

    • Zhang, C., Frias, M., Ruggiu, M., Eom, T., Marney, C., Wang, H., Licatalosi, D., Mele., A., Fak, J., and Darnell, R.B., 2010. Integrative discovery and analysis of a global splicing-regulatory network in mouse brain. Systems Biology: Global Regulation of Gene Expression. Mar 23-27. Cold Spring Harbor, NY (poster).

    • Zhang, C. 2009. Integrative discovery and analysis of a global splicing-regulatory network in mouse brain. Postdoctoral retreat, Rockefeller University, Sep. 21-22.(selected talk).

    • Zhang, C., Ruggiu, M., Frias, M., Eom, T., Marney, C., Wang, H., Licatalosi, D., Mele., A., Fak, J., Darnell, J., and Darnell, R.B., 2009. Integrative discovery and analysis of a global splicing-regulatory network in mouse brain. Eukaryotic mRNA processing. Aug 18-22. Cold Spring Harbor, NY (selected talk).

    • Zhang, C., Li, W.-H., Krainer, A.R. and Zhang, M.Q. 2008. RNA landscape of evolution for optimal exon and intron discrimination. Systems Biology: Global Regulation of Gene Expression. Mar27-30. Cold Spring Harbor, NY (poster).

    • Zhang, C., Zhang Z., Castle, J., Sun, S., Johnson, J., Krainer, A.R. and Zhang, M.Q. 2007. Comprehensive prediction and characterization of pre-mRNA targets of the tissue-specific alternative splicing factors Fox-1/2. RECOMB Regulatory Genomics 2007. Oct 11-13. MIT/Broad Institute, Boston, NY (selected talk).

    • Zhang, C., Zhang Z., Castle, J., Sun, S., Johnson, J., Krainer, A.R., and Zhang, M.Q. 2007. Comprehensive prediction and characterization of pre-mRNA targets of the tissue-specific alternative splicing factors Fox-1/2. Eukaryotic mRNA Processing. Aug 22-26. Cold Spring Harbor, NY (selected talk).

    • Hasting, M.L.*, Krainer, A.R., and Zhang, M.Q. 2007. Dual-specificity splice sites are used as 3' and 5' splice sites. RNA 2007 Annual Meeting. May 29-June3. Madison WI. (selected oral presentation, *presenter)

    • Zhang, C., Krainer, A.R., and Zhang, M.Q. 2006. Comparative genomics evidence for frequent splicing errors in mammals. RNA 2006 Annual Meeting. June 20-25. Seattle, WA.

    • Zhang, C., Xuan, Z., and Zhang M.Q. 2005. Weak transcription factor binding sites enrich the genomes. Mechanisms of Eukaryotic Transcription. Aug 31-Sep4. Cold Spring Harbor Laboratory. NY 11724.

    • Zhang, C., and Li S. 2004. Modeling of neuro-endoimmune network via subject oriented literature mining. The Fourth International Conference on Bioinformatics of Genome Regulation and Structure (BGRS'2004). Novosibirsk, Russia, July 25-30. [PDF]

    • Zhang, C., Li, Y., and Zhang, X. 2004. gMap: extracting and interactively visualizing nonlinear relationships of genes from expression. Proc. RECOMB 2004, March 2004, pp.228-229. [PDF]

    • Zhang, C., Zhang, X., Ma, X., and Li, Y. 2003. Establishing gene relevant networks about breast cancer via automatic literature mining” (in Chinese). China National Computer Congress (CNCC) 2003 [PDF]