Resources
From Zhang Laboratory
Software
- CIMS: Crosslinking induced mutation site (CIMS) analysis. It also includes some other tools for CLIP data analysis (documentation, download)
- mCarts: hidden Markov model (HMM) based methods to predict clusters RNA motif sites (documentation, download)
- NDDcluster: nonparametric "shape free" clustering algorithm based on normalized density derivatives (site)
- OLego: A tool for fast and accurate mapping of exon-junction reads (site, documentation, download)
- Qantas: A pipeline to analyze alternative splicing using RNA-Seq (documentation)
Databases
- Splicebase: a database of alternative splicing and regulation