Difference between revisions of "Resources"
From Zhang Laboratory
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__NOTOC__ | __NOTOC__ | ||
==Software== | ==Software== | ||
| − | *'''CTK''': CLIP Tool Kit ([[CTK_Documentation|documentation]], [[CTK_Documentation#Download|download]]) | + | *'''CTK''': CLIP Tool Kit, previously known as CIMS ([[CTK_Documentation|documentation]], [[CTK_Documentation#Download|download]]) |
| − | + | ||
*'''mCarts''': hidden Markov model (HMM) based methods to predict clusters RNA motif sites ([[mCarts_Documentation|documentation]], [[mCarts_Documentation#Download|download]]) | *'''mCarts''': hidden Markov model (HMM) based methods to predict clusters RNA motif sites ([[mCarts_Documentation|documentation]], [[mCarts_Documentation#Download|download]]) | ||
*'''mRIN''': direct assessment of mRNA integrity from RNA-Seq data ([[mRIN|documentation]]) | *'''mRIN''': direct assessment of mRNA integrity from RNA-Seq data ([[mRIN|documentation]]) | ||
Revision as of 22:49, 7 October 2016
Software
- CTK: CLIP Tool Kit, previously known as CIMS (documentation, download)
- mCarts: hidden Markov model (HMM) based methods to predict clusters RNA motif sites (documentation, download)
- mRIN: direct assessment of mRNA integrity from RNA-Seq data (documentation)
- NDDcluster: nonparametric "shape free" clustering algorithm based on normalized density derivatives (site)
- OLego: A tool for fast and accurate mapping of exon-junction reads (site, documentation, download)
- Quantas: A pipeline to analyze alternative splicing using RNA-Seq (documentation,download)