Difference between revisions of "Resources"
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==Software== | ==Software== | ||
| − | *'''CIMS''': Crosslinking induced mutation site (CIMS) analysis. It also includes some other tools for CLIP data analysis | + | *'''CIMS''': Crosslinking induced mutation site (CIMS) analysis. It also includes some other tools for CLIP data analysis ([[CIMS_Documentation|documentation]], [[CIMS_Documentation#Download|download]]) |
*'''mCarts''': hidden Markov model (HMM) based methods to predict clusters RNA motif sites ([[mCarts_Documentation|documentation]], [[mCarts_Documentation#Download|download]]) | *'''mCarts''': hidden Markov model (HMM) based methods to predict clusters RNA motif sites ([[mCarts_Documentation|documentation]], [[mCarts_Documentation#Download|download]]) | ||
*'''NDDcluster''': nonparametric "shape free" clustering algorithm based on normalized density derivatives ([[NDDcluster|site]]) | *'''NDDcluster''': nonparametric "shape free" clustering algorithm based on normalized density derivatives ([[NDDcluster|site]]) | ||
*'''OLego''': A tool for fast and accurate mapping of exon-junction reads ([[OLego|site]], [[OLego_Documentation|documentation]], [[OLego_Documentation#Download|download]]) | *'''OLego''': A tool for fast and accurate mapping of exon-junction reads ([[OLego|site]], [[OLego_Documentation|documentation]], [[OLego_Documentation#Download|download]]) | ||
*'''Qantas''': A pipeline to analyze alternative splicing using RNA-Seq ([[Quantas_Documentation|documentation]]) | *'''Qantas''': A pipeline to analyze alternative splicing using RNA-Seq ([[Quantas_Documentation|documentation]]) | ||
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==Databases== | ==Databases== | ||
Revision as of 17:50, 14 December 2012
Software
- CIMS: Crosslinking induced mutation site (CIMS) analysis. It also includes some other tools for CLIP data analysis (documentation, download)
- mCarts: hidden Markov model (HMM) based methods to predict clusters RNA motif sites (documentation, download)
- NDDcluster: nonparametric "shape free" clustering algorithm based on normalized density derivatives (site)
- OLego: A tool for fast and accurate mapping of exon-junction reads (site, documentation, download)
- Qantas: A pipeline to analyze alternative splicing using RNA-Seq (documentation)
Databases
- Splicebase: a database of alternative splicing and regulation