Difference between revisions of "Resources"

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(Software)
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*'''OLego''': A tool for fast and accurate mapping of exon-junction reads ([[OLego|site]], [[OLego_Documentation|documentation]], [[OLego_Documentation#Download|download]])
 
*'''OLego''': A tool for fast and accurate mapping of exon-junction reads ([[OLego|site]], [[OLego_Documentation|documentation]], [[OLego_Documentation#Download|download]])
 
*'''Qantas''': A pipeline to analyze alternative splicing using RNA-Seq ([[Quantas_Documentation|documentation]])
 
*'''Qantas''': A pipeline to analyze alternative splicing using RNA-Seq ([[Quantas_Documentation|documentation]])
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==Database==
 
==Database==
  
 
*'''Splicebase''': a database of alternative splicing and regulation
 
*'''Splicebase''': a database of alternative splicing and regulation
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==Protocols==
 
==Protocols==

Revision as of 17:03, 6 November 2012

Software

  • CIMS: Crosslinking induced mutation site (CIMS) analysis. It also includes some other tools for CLIP data analysis
  • mCarts: hidden Markov model (HMM) based methods to predict clusters RNA motif sites (documentation, download)
  • NDDcluster: nonparametric "shape free" clustering algorithm based on normalized density derivatives (site)
  • OLego: A tool for fast and accurate mapping of exon-junction reads (site, documentation, download)
  • Qantas: A pipeline to analyze alternative splicing using RNA-Seq (documentation)


Database

  • Splicebase: a database of alternative splicing and regulation


Protocols