Difference between revisions of "Resources"
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| + | *'''CTK''': CLIP Tool Kit, previously known as CIMS ([[CTK_Documentation|documentation]], [[CTK_Documentation#Download|download]], [https://groups.google.com/forum/#!forum/ctk-user-group user group]) | ||
| + | *'''mCarts''': hidden Markov model (HMM) based methods to predict clusters RNA motif sites ([[mCarts_Documentation|documentation]], [[mCarts_Documentation#Download|download]]) | ||
| + | *'''mCross''': modeling RBP binding specificity by registering protein-RNA crosslink sites ([[MCross|site]]) | ||
| + | *'''mRIN''': direct assessment of mRNA integrity from RNA-Seq data ([[mRIN|documentation]]) | ||
| + | *'''NDDcluster''': nonparametric "shape free" clustering algorithm based on normalized density derivatives ([[NDDcluster|site]]) | ||
| + | *'''OLego''': A tool for fast and accurate mapping of exon-junction reads ([[OLego|site]], [[OLego_Documentation|documentation]], [[OLego_Documentation#Download|download]]) | ||
| + | *'''Splicescope''': prediction of neuronal maturation stages using splicing profile ([[Splicescope|site]]) | ||
| + | *'''Quantas''': A pipeline to analyze alternative splicing using RNA-Seq ([[Quantas_Documentation|documentation]],[[Quantas_Documentation#Download|download]]) | ||
| − | == | + | ==Datasets== |
| − | + | *[[Cortex AS]]: Cortex_AS|A database of known and novel AS events in the brain | |
| − | + | *[[Autism_D-score|Autism D-score]]: Prioritization of autism risk genes using D-score derived from CSN cell type-specific gene expression. | |
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Revision as of 10:24, 24 June 2019
Software
- CTK: CLIP Tool Kit, previously known as CIMS (documentation, download, user group)
- mCarts: hidden Markov model (HMM) based methods to predict clusters RNA motif sites (documentation, download)
- mCross: modeling RBP binding specificity by registering protein-RNA crosslink sites (site)
- mRIN: direct assessment of mRNA integrity from RNA-Seq data (documentation)
- NDDcluster: nonparametric "shape free" clustering algorithm based on normalized density derivatives (site)
- OLego: A tool for fast and accurate mapping of exon-junction reads (site, documentation, download)
- Splicescope: prediction of neuronal maturation stages using splicing profile (site)
- Quantas: A pipeline to analyze alternative splicing using RNA-Seq (documentation,download)
Datasets
- Cortex AS: Cortex_AS|A database of known and novel AS events in the brain
- Autism D-score: Prioritization of autism risk genes using D-score derived from CSN cell type-specific gene expression.