Difference between revisions of "Resources"

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(Software)
(Software)
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*'''Qantas''': A pipeline to analyze alternative splicing using RNA-Seq ([[Quantas_Documentation|documentation]])
 
*'''Qantas''': A pipeline to analyze alternative splicing using RNA-Seq ([[Quantas_Documentation|documentation]])
 
*'''OLego''': A tool for fast and accurate mapping of exon-junction reads ([[OLego_Documentation|documentation]], [[OLego_Documentation#Download|download]])
 
*'''OLego''': A tool for fast and accurate mapping of exon-junction reads ([[OLego_Documentation|documentation]], [[OLego_Documentation#Download|download]])
*CIMS: Crosslinking induced mutation site (CIMS) analysis. It also includes some other tools for CLIP data analysis
+
*'''CIMS''': Crosslinking induced mutation site (CIMS) analysis. It also includes some other tools for CLIP data analysis
  
 
==Database==
 
==Database==

Revision as of 09:00, 20 September 2012


Software

  • mCarts: hidden Markov model (HMM) based methods to predict clusters RNA motif sites (documentation, download)
  • Qantas: A pipeline to analyze alternative splicing using RNA-Seq (documentation)
  • OLego: A tool for fast and accurate mapping of exon-junction reads (documentation, download)
  • CIMS: Crosslinking induced mutation site (CIMS) analysis. It also includes some other tools for CLIP data analysis

Database

  • Splicebase: a database of alternative splicing and regulation

Protocols