|
Resources
From Zhang Laboratory
We are committed to making resources generated in the lab, including datasets and software tools, available for the research communities.
|
Software
|
- CTK: CLIP Tool Kit, previously known as CIMS (documentation, download, user group)
- mCarts: hidden Markov model (HMM) based methods to predict clusters RNA motif sites (documentation, download)
- mCross: modeling RBP binding specificity by registering protein-RNA crosslink sites (site)
- mRIN: direct assessment of mRNA integrity from RNA-Seq data (documentation)
- NDDcluster: nonparametric "shape free" clustering algorithm based on normalized density derivatives (site)
- OLego: A tool for fast and accurate mapping of exon-junction reads (site, documentation, download)
- Splicescope: prediction of neuronal maturation stages using splicing profile (site)
- Quantas: A pipeline to analyze alternative splicing using RNA-Seq (documentation,download)
|
Datasets
200px
|
- Cortex AS: Cortex_AS|A database of known and novel AS events in the brain
- Autism D-score: Prioritization of autism risk genes using D-score derived from CSN cell type-specific gene expression.
|
|