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Resources
From Zhang Laboratory
Software
- CIMS: Crosslinking induced mutation site (CIMS) analysis. It also includes some other tools for CLIP data analysis
- mCarts: hidden Markov model (HMM) based methods to predict clusters RNA motif sites (documentation, download)
- NDDcluster:nonparametric clustering algorithm based on normalized density derivatives (site)
- OLego: A tool for fast and accurate mapping of exon-junction reads (site, documentation, download)
- Qantas: A pipeline to analyze alternative splicing using RNA-Seq (documentation)
Database
- Splicebase: a database of alternative splicing and regulation
Protocols
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