Resources

From Zhang Laboratory

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Software

  • CIMS: Crosslinking induced mutation site (CIMS) analysis. It also includes some other tools for CLIP data analysis
  • mCarts: hidden Markov model (HMM) based methods to predict clusters RNA motif sites (documentation, download)
  • OLego: A tool for fast and accurate mapping of exon-junction reads (documentation, download)
  • Qantas: A pipeline to analyze alternative splicing using RNA-Seq (documentation)

Database

  • Splicebase: a database of alternative splicing and regulation

Protocols

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