Difference between revisions of "Resources"
From Zhang Laboratory
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*'''Quantas''': A pipeline to analyze alternative splicing using RNA-Seq ([[Quantas_Documentation|documentation]],[[Quantas_Documentation#Download|download]]) | *'''Quantas''': A pipeline to analyze alternative splicing using RNA-Seq ([[Quantas_Documentation|documentation]],[[Quantas_Documentation#Download|download]]) | ||
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| − | * | + | *[[CortexAS A database of known and novel AS events in the brain]] |
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Revision as of 08:00, 7 March 2015
Software
- CIMS: Crosslinking induced mutation site (CIMS) analysis. It also includes some other tools for CLIP data analysis (documentation, download)
- scripts for cross linking induced truncation site (CITS) analysis are now included.
- mCarts: hidden Markov model (HMM) based methods to predict clusters RNA motif sites (documentation, download)
- NDDcluster: nonparametric "shape free" clustering algorithm based on normalized density derivatives (site)
- OLego: A tool for fast and accurate mapping of exon-junction reads (site, documentation, download)
- Quantas: A pipeline to analyze alternative splicing using RNA-Seq (documentation,download)