Data and motif summary of RBP TIA1

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RBP summary

RBP Name: TIA1
RBP description: TIA1 Cytotoxic Granule Associated RNA Binding Protein
UniProt ID: P31483
Entrez Gene: 7072
Species: Homo Sapiens
Protein domains: RRMx3
Subcellular localization
(1 (nucleus) – 5 (cytoplasm): 		x(HepG2)
x(HeLa)

CLIP data summary

Data source: ENCODE Cell-type/Tissue: K562
Unique tags: 16715737 Peaks: 82545
Genomic distribution:
  • CDS exon
  • 5' UTR exon
  • Upstream 10K
  • 3' UTR exon
  • Downstream 10K
  • Intron
  • Deep intergenic
Crosslink sites: 1377 (CIMS, deletion) ; 1491 (CIMS, insertion); 22246 (CIMS, substitution); 38042 (CITS)

Motif summary

Cluster Motif Name Consensus Motif logo Score No. Sites AI scatter plot AI consistency AI p-value
1 K562.TIA1.0
  • TCTTTGG
  • TCTTGGG
  • TCTTGGC
    		•  407.0923903 5265 0.483870968 (30/62) 0.648231664
    1 K562.TIA1.1
  • CTCTTGG
  • TTCTTGG
    		•  331.8915601 3026 0.580645161 (18/31) 0.23656483
    1 K562.TIA1.2
  • CTTTGGT
    		•  281.236076 1670 0.6 (30/50) 0.101319376
    2 K562.TIA1.3
  • CTTGGTC
    		•  236.406077 1286 0.642857143 (36/56) 0.022023273
    3 K562.TIA1.4
  • TTCTGGT
    		•  280.0703751 1837 0.564102564 (22/39) 0.26119869
    3 K562.TIA1.5
  • TCTGGCT
    		•  271.6695087 1787 0.675 (27/40) 0.019238654
    4 K562.TIA1.6
  • TCGGGTC
    		•  187.138102 736 0.576271186 (34/59) 0.148797604