Data and motif summary of RBP AGGF1

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RBP summary

RBP Name: AGGF1
RBP description: Angiogenic Factor With G-Patch And FHA Domains 1
UniProt ID: Q8N302
Entrez Gene: 55109
Species: Homo Sapiens
Protein domains:
Subcellular localization
(1 (nucleus) – 5 (cytoplasm): 		3(HepG2)
3(HeLa)

CLIP data summary

Data source: ENCODE Cell-type/Tissue: K562
Unique tags: 14587256 Peaks: 40841
Genomic distribution:
  • CDS exon
  • 5' UTR exon
  • Upstream 10K
  • 3' UTR exon
  • Downstream 10K
  • Intron
  • Deep intergenic
Crosslink sites: 1791 (CIMS, deletion) ; 2902 (CIMS, insertion); 38430 (CIMS, substitution); 16369 (CITS)

Motif summary

Cluster Motif Name Consensus Motif logo Score No. Sites AI scatter plot AI consistency AI p-value
1 K562.AGGF1.0
  • GAAGAAA
    		•  118.2250027 298 0.625 (5/8) 0.36328125
    1 K562.AGGF1.2
  • AAGAACT
    		•  98.77431578 187 0.6 (9/15) 0.303619385
    1 K562.AGGF1.5
  • AAGAAAC
  • AAGAAAA
  • AAGAAGA
    		•  167.1134964 750 0.583333333 (7/12) 0.387207031
    2 K562.AGGF1.3
  • AAAGAAG
  • AATGAAG
    		•  127.3475315 465 0.548387097 (17/31) 0.360050066
    3 K562.AGGF1.1
  • CACACAC
  • CACACAA
    		•  437.9986253 2599 0.666666667 (2/3) 0.5
    3 K562.AGGF1.4
  • ACACACA
    		•  392.8673739 2110 0.375 (3/8) 0.85546875